Glyma12g27040 - SoyBase

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Report for Sequence Feature Glyma12g27040

Feature Type:	gene_model
Chromosome:	Gm12
Start:	30499792
stop:	30501561
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g27040

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G10720	AT	Annotation by Michelle Graham. TAIR10: Ankyrin repeat family protein \| chr4:6607879-6609358 FORWARD LENGTH=445	SoyBase	E_val: 4.00E-104	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005575	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cellular component	SoyBase	N/A	ISS
KOG4412	KOG	26S proteasome regulatory complex, subunit PSMD10	JGI		ISS
PF00023	PFAM	Ankyrin repeat	JGI		ISS
UniRef100_G7L8Q1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ankyrin repeat protein n=1 Tax=Medicago truncatula RepID=G7L8Q1_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233C18B	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233C18B related cluster n=1 Tax=unknown RepID=UPI000233C18B	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma12g27040

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma12g27040 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.U025300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g27040

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma12g27040

Limit To All Plant Sequences

>Glyma12g27040.2   sequence type=CDS   gene model=Glyma12g27040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACACAAGTGATGACAAGTTAAAAGTTGCAGCACAAGAAGGTGACATAAGCCTTCTTTACACACTAATTCAGGAGGATCTACACGTTTTGGACCACATGGATTTGACACCATTTGCTGAAACACCTTTGCATATTGTTGCATGTGTTGGACATCTCCAGTTTGCCACTGAGATTATGAGGTTGAAACCATCATTTGCTTCGAAGTTAAATCAGCAAGGATTCACTCCCATTCACCTCGATATGCAACATGGCCAAAAGAGAATGGTGCTTCGCTTTGTAGACATCAACAAAGACCTCGTTCGAGTCAAAGGAAGGGAGGGCCTAACTCCTTTTCATTTTGCAAGTCAAAAAGGAGAAATTGACCTTTTAGCTAACTTTCTCTTGGCTTGTCCAGATTCCATTGAAGATGTGACTGTTAGATGTGAGACTGCACTTCATATTGCATTGAGATCTCAACAGTATGAGGCTTTTCGAGTCTTAGTCGGGTGGCTCCAGAGAACACGCCAGAGAGGTGCAACTACATTAGAAAAAACAATACTAAACTGGAGGAATGAAGAAGGCAACACCATTTTGCACGTCTCAGCACTCATGAATGACTCAAAGGCAATTCGATTGTTGGTAAAGACTAAGGTGGATTTAAATGCCAAGAATTGGGAGAACTTAACAGCATTAGACATAGCAGCCAATGCAGAGGTAAAGATTGTGTTAGCTAAGGCTGGTGCAAAGCATGGTTCATCAATTACTAATGCTCCCACCTTTCCTGATAAACTAAGATCCAACATCACATTGATGGAAAAAATAATTATCTTCATACTTCGCATTAGAAGGGATATAACAGAAGACCAACGCAACGCGTTTCTGATAGTTGCTGCTCTTGTTGCGACCGCTACTTATCAATCAGCACTGAGCCCCCCTGGTGGAGTTTATCAGGCTAACGCCGGCGATAACAATACCAACTCTACTCCTTCCCTCAATTCTACAGTTGCTACAACTGCAACCCACGGTAATGCTGGGAAATCAGTGATGACTGTTGGCGATTTTCTGACCTTGTCAATTTTTAATACACTTTCGCTTTTGGTGTCAATTATGACAATGTTTATTCTAACTCCAAGTGGGACAGTAGGTAGTATATTGTCTGCGCCAATGTTTTTGTTTGTCTCCTGCTATCTTCATTCTATGAAGGTGATATCACCTGACAATGCTACCTCATTTGGTCATTATATTACGGCATCCTTATTCAGCATCTTGTACTTGGCAGCATCTTGGTCAATGGCCAAAGTGTACAAGAGACTTCAGCATCATGATAAGAATAGGGAAATGAAAACGTGGAATAGTATAGCAGGAAATAGATGGTAG

Predicted protein sequences of Glyma12g27040

Limit To All Plant Sequences

>Glyma12g27040.2   sequence type=predicted peptide   gene model=Glyma12g27040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNTSDDKLKVAAQEGDISLLYTLIQEDLHVLDHMDLTPFAETPLHIVACVGHLQFATEIMRLKPSFASKLNQQGFTPIHLDMQHGQKRMVLRFVDINKDLVRVKGREGLTPFHFASQKGEIDLLANFLLACPDSIEDVTVRCETALHIALRSQQYEAFRVLVGWLQRTRQRGATTLEKTILNWRNEEGNTILHVSALMNDSKAIRLLVKTKVDLNAKNWENLTALDIAANAEVKIVLAKAGAKHGSSITNAPTFPDKLRSNITLMEKIIIFILRIRRDITEDQRNAFLIVAALVATATYQSALSPPGGVYQANAGDNNTNSTPSLNSTVATTATHGNAGKSVMTVGDFLTLSIFNTLSLLVSIMTMFILTPSGTVGSILSAPMFLFVSCYLHSMKVISPDNATSFGHYITASLFSILYLAASWSMAKVYKRLQHHDKNREMKTWNSIAGNRW*

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