SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G53940 | AT | Annotation by Michelle Graham. TAIR10: Yippee family putative zinc-binding protein | chr5:21897164-21898589 REVERSE LENGTH=129 | SoyBase | E_val: 1.00E-70 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| KOG3399 | KOG | Predicted Yippee-type zinc-binding protein | JGI | ISS | |
| PTHR13847 | Panther | FAD NAD BINDING OXIDOREDUCTASES | JGI | ISS | |
| PTHR13847:SF40 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF03226 | PFAM | Yippee putative zinc-binding protein | JGI | ISS | |
| UniRef100_C6SWS2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SWS2_SOYBN | SoyBase | E_val: 7.00E-90 | ISS |
| UniRef100_G7LDR9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Protein yippee-like protein n=1 Tax=Medicago truncatula RepID=G7LDR9_MEDTR | SoyBase | E_val: 6.00E-69 | ISS |
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Glyma12g26980 not represented in the dataset |
Glyma12g26980 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.12g162800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma12g26980.2 sequence type=transcript gene model=Glyma12g26980 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GTTAATTATTTTCATTGGTTAAACTTATGACCTTCCTAGATAAGCTCTTTTTAACTTATTTTAATAAGATTCACCATAAAACTTTGTTGAAATAACTAAAAAGAAATTGTAGGAAGGTGTCACTTTCATTTTCATAAGCTTAACCCAACCACTTCAATTTTAAGCTTAAGCTTAAGTTCTTGGATCATAAAATAAGCCCAAATAAGCTTTGTAGAAGCTCTTTCTAACACATGCTATACACTCTTTCCTATCAAAGCTATTTTGGGAATTGTTTGGTTCTACTTTTTCTTATACGAAAACATCACTAGATCTGAATTTTCCAATTCTTAAGGGTGTGCTTTTGTTTTCGCTCCATGATCCAGTGTGAACTTCACAATTGGAGAGCTAGAGGAAAGGTTGATGCTTTCGGGACTGCATACTGTGGCAGATATTTTTTGTTGTTGCTGTGGTCAAATAGTTGGCTGGAAATATGAGTCTGCACATGAGAGAAACCAAAAGTATAAAGAGGGGAAGTTTGTTCTTGAAAGAGGGAGGATTGTTGATGAAATGGATTTCTCCACTGAATTCCGTATTGAGAGTTGTGTCAGCATGAGTGATGCTGAAAATGCTTAAACTTTTTAAAATCTTCTGTACTTATCAGATCAGGTGAAAGAATCGACTTTTTTCCTTTTTCTTTTTATGTGAAAATAAAGTAGAACCATGAAATGTTTAGAATCTAAATTTGTTTTACTATTTATTTATAGTAATAACAGGTAATT
>Glyma12g26980.1 sequence type=CDS gene model=Glyma12g26980 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGAAGAATCTTCACGGTGGAGCTTGAGGGTAGGTCTTACAGTTGCAAGTCCTGCAAAACCCACCTAGCCCTTGCAGATGATCTCATCTCTCGTTCATTTTATTGCCAGCGGGGAAAAGCATATCTCTTCAATAATGTTGTGAACTTCACAATTGGAGAGCTAGAGGAAAGGTTGATGCTTTCGGGACTGCATACTGTGGCAGATATTTTTTGTTGTTGCTGTGGTCAAATAGTTGGCTGGAAATATGAGTCTGCACATGAGAGAAACCAAAAGTATAAAGAGGGGAAGTTTGTTCTTGAAAGAGGGAGGATTGTTGATGAAATGGATTTCTCCACTGAATTCCGTATTGAGAGTTGTGTCAGCATGAGTGATGCTGAAAATGCTTAA >Glyma12g26980.2 sequence type=CDS gene model=Glyma12g26980 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCTTTCGGGACTGCATACTGTGGCAGATATTTTTTGTTGTTGCTGTGGTCAAATAGTTGGCTGGAAATATGAGTCTGCACATGAGAGAAACCAAAAGTATAAAGAGGGGAAGTTTGTTCTTGAAAGAGGGAGGATTGTTGATGAAATGGATTTCTCCACTGAATTCCGTATTGAGAGTTGTGTCAGCATGAGTGATGCTGAAAATGCTTAA
>Glyma12g26980.1 sequence type=predicted peptide gene model=Glyma12g26980 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGRIFTVELEGRSYSCKSCKTHLALADDLISRSFYCQRGKAYLFNNVVNFTIGELEERLMLSGLHTVADIFCCCCGQIVGWKYESAHERNQKYKEGKFVLERGRIVDEMDFSTEFRIESCVSMSDAENA* >Glyma12g26980.2 sequence type=predicted peptide gene model=Glyma12g26980 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLSGLHTVADIFCCCCGQIVGWKYESAHERNQKYKEGKFVLERGRIVDEMDFSTEFRIESCVSMSDAENA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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