SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research



Report for Sequence Feature Glyma12g26980

Feature Type:gene_model
Chromosome:Gm12
Start:30317764
stop:30323925
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G53940AT Annotation by Michelle Graham. TAIR10: Yippee family putative zinc-binding protein | chr5:21897164-21898589 REVERSE LENGTH=129 SoyBaseE_val: 1.00E-70ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
KOG3399 KOG Predicted Yippee-type zinc-binding protein JGI ISS
PTHR13847Panther FAD NAD BINDING OXIDOREDUCTASES JGI ISS
PTHR13847:SF40Panther SUBFAMILY NOT NAMED JGI ISS
PF03226PFAM Yippee putative zinc-binding protein JGI ISS
UniRef100_C6SWS2UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SWS2_SOYBN SoyBaseE_val: 7.00E-90ISS
UniRef100_G7LDR9UniRef Annotation by Michelle Graham. Most informative UniRef hit: Protein yippee-like protein n=1 Tax=Medicago truncatula RepID=G7LDR9_MEDTR SoyBaseE_val: 6.00E-69ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments
Glyma.12g162800 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma12g26980.2   sequence type=transcript   gene model=Glyma12g26980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTTAATTATTTTCATTGGTTAAACTTATGACCTTCCTAGATAAGCTCTTTTTAACTTATTTTAATAAGATTCACCATAAAACTTTGTTGAAATAACTAAAAAGAAATTGTAGGAAGGTGTCACTTTCATTTTCATAAGCTTAACCCAACCACTTCAATTTTAAGCTTAAGCTTAAGTTCTTGGATCATAAAATAAGCCCAAATAAGCTTTGTAGAAGCTCTTTCTAACACATGCTATACACTCTTTCCTATCAAAGCTATTTTGGGAATTGTTTGGTTCTACTTTTTCTTATACGAAAACATCACTAGATCTGAATTTTCCAATTCTTAAGGGTGTGCTTTTGTTTTCGCTCCATGATCCAGTGTGAACTTCACAATTGGAGAGCTAGAGGAAAGGTTGATGCTTTCGGGACTGCATACTGTGGCAGATATTTTTTGTTGTTGCTGTGGTCAAATAGTTGGCTGGAAATATGAGTCTGCACATGAGAGAAACCAAAAGTATAAAGAGGGGAAGTTTGTTCTTGAAAGAGGGAGGATTGTTGATGAAATGGATTTCTCCACTGAATTCCGTATTGAGAGTTGTGTCAGCATGAGTGATGCTGAAAATGCTTAAACTTTTTAAAATCTTCTGTACTTATCAGATCAGGTGAAAGAATCGACTTTTTTCCTTTTTCTTTTTATGTGAAAATAAAGTAGAACCATGAAATGTTTAGAATCTAAATTTGTTTTACTATTTATTTATAGTAATAACAGGTAATT

>Glyma12g26980.1   sequence type=CDS   gene model=Glyma12g26980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAAGAATCTTCACGGTGGAGCTTGAGGGTAGGTCTTACAGTTGCAAGTCCTGCAAAACCCACCTAGCCCTTGCAGATGATCTCATCTCTCGTTCATTTTATTGCCAGCGGGGAAAAGCATATCTCTTCAATAATGTTGTGAACTTCACAATTGGAGAGCTAGAGGAAAGGTTGATGCTTTCGGGACTGCATACTGTGGCAGATATTTTTTGTTGTTGCTGTGGTCAAATAGTTGGCTGGAAATATGAGTCTGCACATGAGAGAAACCAAAAGTATAAAGAGGGGAAGTTTGTTCTTGAAAGAGGGAGGATTGTTGATGAAATGGATTTCTCCACTGAATTCCGTATTGAGAGTTGTGTCAGCATGAGTGATGCTGAAAATGCTTAA

>Glyma12g26980.2   sequence type=CDS   gene model=Glyma12g26980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTTTCGGGACTGCATACTGTGGCAGATATTTTTTGTTGTTGCTGTGGTCAAATAGTTGGCTGGAAATATGAGTCTGCACATGAGAGAAACCAAAAGTATAAAGAGGGGAAGTTTGTTCTTGAAAGAGGGAGGATTGTTGATGAAATGGATTTCTCCACTGAATTCCGTATTGAGAGTTGTGTCAGCATGAGTGATGCTGAAAATGCTTAA

>Glyma12g26980.1   sequence type=predicted peptide   gene model=Glyma12g26980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGRIFTVELEGRSYSCKSCKTHLALADDLISRSFYCQRGKAYLFNNVVNFTIGELEERLMLSGLHTVADIFCCCCGQIVGWKYESAHERNQKYKEGKFVLERGRIVDEMDFSTEFRIESCVSMSDAENA*

>Glyma12g26980.2   sequence type=predicted peptide   gene model=Glyma12g26980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLSGLHTVADIFCCCCGQIVGWKYESAHERNQKYKEGKFVLERGRIVDEMDFSTEFRIESCVSMSDAENA*







Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo