Report for Sequence Feature Glyma12g26980
Feature Type: gene_model
Chromosome: Gm12
Start: 30317764
stop: 30323925
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma12g26980
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G53940 AT
Annotation by Michelle Graham. TAIR10: Yippee family putative zinc-binding protein | chr5:21897164-21898589 REVERSE LENGTH=129
SoyBase E_val: 1.00E-70 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
KOG3399
KOG
Predicted Yippee-type zinc-binding protein
JGI ISS
PTHR13847 Panther
FAD NAD BINDING OXIDOREDUCTASES
JGI ISS
PTHR13847:SF40 Panther
SUBFAMILY NOT NAMED
JGI ISS
PF03226 PFAM
Yippee putative zinc-binding protein
JGI ISS
UniRef100_C6SWS2 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SWS2_SOYBN
SoyBase E_val: 7.00E-90 ISS
UniRef100_G7LDR9 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Protein yippee-like protein n=1 Tax=Medicago truncatula RepID=G7LDR9_MEDTR
SoyBase E_val: 6.00E-69 ISS
Expression Patterns of Glyma12g26980
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Gene model name correspondences to Glyma12g26980 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.12g162800 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma12g26980
Transcripts of Glyma12g26980
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma12g26980.2 sequence type=transcript gene model=Glyma12g26980 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
GTTAATTATTTTCATTGGTTAAACTTATGACCTTCCTAGATAAGCTCTTTTTAACTTATTTTAATAAGATTCACCATAAAACTTTGTTGAAATAACTAAAAAGAAATTGTAGGAAGGTGTCACTTTCATTTTCATAAGCTTAACCCAACCACTTCAATTTTAAGCTTAAGCTTAAGTTCTTGGATCATAAAATAAGCCCAAATAAGCTTTGTAGAAGCTCTTTCTAACACATGCTATACACTCTTTCCTATCAAAGCTATTTTGGGAATTGTTTGGTTCTACTTTTTCTTATACGAAAACATCACTAGATCTGAATTTTCCAATTCTTAAGGGTGTGCTTTTGTTTTCGCTCCATGATCCAGTGTGAACTTCACAATTGGAGAGCTAGAGGAAAGGTTGATGCTTTCGGGACTGCATACTGTGGCAGATATTTTTTGTTGTTGCTGTGGTCAAATAGTTGGCTGGAAATATGAGTCTGCACATGAGAGAAACCAAAAGTATAAAGAGGGGAAGTTTGTTCTTGAAAGAGGGAGGATTGTTGATGAAATGGATTTCTCCACTGAATTCCGTATTGAGAGTTGTGTCAGCATGAGTGATGCTGAAAATGCTTAAACTTTTTAAAATCTTCTGTACTTATCAGATCAGGTGAAAGAATCGACTTTTTTCCTTTTTCTTTTTATGTGAAAATAAAGTAGAACCATGAAATGTTTAGAATCTAAATTTGTTTTACTATTTATTTATAGTAATAACAGGTAATT
Coding sequences of Glyma12g26980
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma12g26980.1 sequence type=CDS gene model=Glyma12g26980 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGGAAGAATCTTCACGGTGGAGCTTGAGGGTAGGTCTTACAGTTGCAAGTCCTGCAAAACCCACCTAGCCCTTGCAGATGATCTCATCTCTCGTTCATTTTATTGCCAGCGGGGAAAAGCATATCTCTTCAATAATGTTGTGAACTTCACAATTGGAGAGCTAGAGGAAAGGTTGATGCTTTCGGGACTGCATACTGTGGCAGATATTTTTTGTTGTTGCTGTGGTCAAATAGTTGGCTGGAAATATGAGTCTGCACATGAGAGAAACCAAAAGTATAAAGAGGGGAAGTTTGTTCTTGAAAGAGGGAGGATTGTTGATGAAATGGATTTCTCCACTGAATTCCGTATTGAGAGTTGTGTCAGCATGAGTGATGCTGAAAATGCTTAA
>Glyma12g26980.2 sequence type=CDS gene model=Glyma12g26980 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGCTTTCGGGACTGCATACTGTGGCAGATATTTTTTGTTGTTGCTGTGGTCAAATAGTTGGCTGGAAATATGAGTCTGCACATGAGAGAAACCAAAAGTATAAAGAGGGGAAGTTTGTTCTTGAAAGAGGGAGGATTGTTGATGAAATGGATTTCTCCACTGAATTCCGTATTGAGAGTTGTGTCAGCATGAGTGATGCTGAAAATGCTTAA
Predicted protein sequences of Glyma12g26980
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma12g26980.1 sequence type=predicted peptide gene model=Glyma12g26980 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MGRIFTVELEGRSYSCKSCKTHLALADDLISRSFYCQRGKAYLFNNVVNFTIGELEERLMLSGLHTVADIFCCCCGQIVGWKYESAHERNQKYKEGKFVLERGRIVDEMDFSTEFRIESCVSMSDAENA*
>Glyma12g26980.2 sequence type=predicted peptide gene model=Glyma12g26980 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MLSGLHTVADIFCCCCGQIVGWKYESAHERNQKYKEGKFVLERGRIVDEMDFSTEFRIESCVSMSDAENA*