Glyma12g26836 - SoyBase

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Report for Sequence Feature Glyma12g26836

Feature Type:	gene_model
Chromosome:	Gm12
Start:	30094765
stop:	30095332
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g26836

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G44210	AT	Annotation by Michelle Graham. TAIR10: erf domain protein 9 \| chr5:17806742-17807344 FORWARD LENGTH=200	SoyBase	E_val: 7.00E-39	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0006857	GO-bp	Annotation by Michelle Graham. GO Biological Process: oligopeptide transport	SoyBase	N/A	ISS
GO:0009873	GO-bp	Annotation by Michelle Graham. GO Biological Process: ethylene mediated signaling pathway	SoyBase	N/A	ISS
GO:0045892	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PF00847	PFAM	AP2 domain	JGI		ISS
UniRef100_C6T283	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ethylene-responsive transcription factor 6 n=1 Tax=Glycine max RepID=C6T283_SOYBN	SoyBase	E_val: 2.00E-38	ISS
UniRef100_I1KDR5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KDR5_SOYBN	SoyBase	E_val: 4.00E-53	ISS

Expression Patterns of Glyma12g26836

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma12g26836 not represented in the dataset	Glyma12g26836 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma12g26836 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g162700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g26836

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma12g26836

Limit To All Plant Sequences

>Glyma12g26836.1   sequence type=CDS   gene model=Glyma12g26836   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCCGAGGGATATCAATAGATCTAACGTTGTTGTTGCCGGAGGATCCAACCCGACCCGTAAAGAGATCCGATACCGCGGCGTGAGGAAGCGGCCGTGGGGCCGCTACGCCGCCGAGATCCGCGATCCCGGCAAGAAGACGCGCGTCTGGCTAGGAACGTTCGACACCGCGGAGGAGGCGGCGCGTGCGTACGATGCGGCGGCGCGTGAGTTCCGCGGCGCAAAGGCTAAGACCAATTTCCCCACCCACGCGGAGCTGACGCACGCGGCGGGCGCCGACTCGGACTCGTCCACGGTCATGGATTACGAGCGGGGCTCACGTCGGAGAGTGTTGGATCTTGACCTTAATGTCCCTCCTCCGCCCGAGGTTGCCTGA

Predicted protein sequences of Glyma12g26836

Limit To All Plant Sequences

>Glyma12g26836.1   sequence type=predicted peptide   gene model=Glyma12g26836   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAPRDINRSNVVVAGGSNPTRKEIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDAAAREFRGAKAKTNFPTHAELTHAAGADSDSSTVMDYERGSRRRVLDLDLNVPPPPEVA*

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