SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G15180 | AT | Annotation by Michelle Graham. TAIR10: ARM repeat superfamily protein | chr3:5111952-5115803 FORWARD LENGTH=551 | SoyBase | E_val: 5.00E-82 | ISS |
| GO:0009410 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to xenobiotic stimulus | SoyBase | N/A | ISS |
| GO:0042023 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA endoreduplication | SoyBase | N/A | ISS |
| GO:0043161 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proteasomal ubiquitin-dependent protein catabolic process | SoyBase | N/A | ISS |
| GO:0043248 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proteasome assembly | SoyBase | N/A | ISS |
| GO:0048522 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of cellular process | SoyBase | N/A | ISS |
| GO:0051510 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of unidimensional cell growth | SoyBase | N/A | ISS |
| GO:0051788 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to misfolded protein | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005774 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane | SoyBase | N/A | ISS |
| GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
| GO:0044183 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding involved in protein folding | SoyBase | N/A | ISS |
| PTHR13554 | Panther | 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 5-RELATED | JGI | ISS | |
| PTHR13554:SF5 | Panther | 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 5-RELATED | JGI | ISS | |
| PF10508 | PFAM | Proteasome non-ATPase 26S subunit | JGI | ISS | |
| UniRef100_G7LDS0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: 26S proteasome non-ATPase regulatory subunit n=2 Tax=Medicago truncatula RepID=G7LDS0_MEDTR | SoyBase | E_val: 2.00E-124 | ISS |
| UniRef100_UPI000233C185 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233C185 related cluster n=1 Tax=unknown RepID=UPI000233C185 | SoyBase | E_val: 0 | ISS |
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Glyma12g26454 not represented in the dataset |
Glyma12g26454 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.12g162200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma12g26454.1 sequence type=CDS gene model=Glyma12g26454 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTGGATTCATCTCAACTCCTCGAAGCAGCTTCTGATTTCGCTCACTACACAGGGGCGCACAGCGATGATTCCGCCAGGGACTTTCTTAATCGCTTCCCTCTCCCAGTCATCTTCAGTGCATTACAGACTCAGTTTGATGTGCCTGGCCTAGAAAATACTCTTGTTACATGCCTTGAAAGGTTATTCAATACGAAGTTGGGTGCTTCTCTGATCCCGCAGTATATGCCTTTTGTTCAAGTTGGTCTGCAGGCAGATTCTCAAGCAGTCAGATCCTTAGCTTGCAAAACAGTTACATGCCTTATTGAGAATCTAGACAATGATCACAAAGTTGCAGCTAGTGTTCGTCTAATTAAAGACTTCAATATGTATCCTCTTTTGCTTGATTGCTTTATAAAGGGCAAAATGTTACCTTGCTGGGGTTGTTCCTCTTCATTTTTAAAGTGTCCATGTGTTAAAGTTGTTATTTCGTCTATTGATGGTAGACTTCAGTCATTGGATGCTTTAGATAGAGATGAATGTGAAACTGCACTTGAATCATTGGGTCATATGGGATCATATATCCAGGGAGCTACATTACTACTCTCAGGTTCATCACCTGCTGCTCGACATGTTATAGATGCTGCTTTTGAAGGACAAGGACCAACAGGGCATGGTAAACAGCTGTTTACATTGCATGCTCTAGGAAATATCTCGGGAAAAACCAGATCCGAGAATAGCATCATACTCAATGCTGAAGCAGAAGTAAACCTGCGGCGCTTAATTTATGAAACAGCATCCAGAAGCACAAAGCTGACTCCATCGGGTCTTTTTCTGTCAGTACTGCAGCAGGATTCAGAAATGCGTCTAGCGGGCTATAGAATGCTAAGTGAATTGGTTGCCCGACCATGGTGCTTGATGGAGATATGTTCAAAACAAGAGATTATAAATAAAGTGACCGACCCAAGTACTGAAACCACAAAAATAGGTATGGAAGGCAGATATGACTGCTGCAAGGCAATACACAAGTCATTGACAGTGTCTAGTAGAGTTTCTGCTAATCCAGCTTTTGCAGGAATAGCTGCAAAGTTGCAGGAAGCTGTTGAAATGGGTCCATATCTTATTAAAAGGCATGTTGAAGCTCAACCTGCTGTGATGACGGCTGATAGATTTTAG
>Glyma12g26454.1 sequence type=predicted peptide gene model=Glyma12g26454 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVDSSQLLEAASDFAHYTGAHSDDSARDFLNRFPLPVIFSALQTQFDVPGLENTLVTCLERLFNTKLGASLIPQYMPFVQVGLQADSQAVRSLACKTVTCLIENLDNDHKVAASVRLIKDFNMYPLLLDCFIKGKMLPCWGCSSSFLKCPCVKVVISSIDGRLQSLDALDRDECETALESLGHMGSYIQGATLLLSGSSPAARHVIDAAFEGQGPTGHGKQLFTLHALGNISGKTRSENSIILNAEAEVNLRRLIYETASRSTKLTPSGLFLSVLQQDSEMRLAGYRMLSELVARPWCLMEICSKQEIINKVTDPSTETTKIGMEGRYDCCKAIHKSLTVSSRVSANPAFAGIAAKLQEAVEMGPYLIKRHVEAQPAVMTADRF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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