Glyma12g26190 - SoyBase

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Report for Sequence Feature Glyma12g26190

Feature Type:	gene_model
Chromosome:	Gm12
Start:	29514536
stop:	29517365
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g26190

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G53950	AT	Annotation by Michelle Graham. TAIR10: NAC (No Apical Meristem) domain transcriptional regulator superfamily protein \| chr5:21901966-21903795 REVERSE LENGTH=375	SoyBase	E_val: 1.00E-110	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0007275	GO-bp	Annotation by Michelle Graham. GO Biological Process: multicellular organismal development	SoyBase	N/A	ISS
GO:0009965	GO-bp	Annotation by Michelle Graham. GO Biological Process: leaf morphogenesis	SoyBase	N/A	ISS
GO:0010072	GO-bp	Annotation by Michelle Graham. GO Biological Process: primary shoot apical meristem specification	SoyBase	N/A	ISS
GO:0010160	GO-bp	Annotation by Michelle Graham. GO Biological Process: formation of organ boundary	SoyBase	N/A	ISS
GO:0010223	GO-bp	Annotation by Michelle Graham. GO Biological Process: secondary shoot formation	SoyBase	N/A	ISS
GO:0048366	GO-bp	Annotation by Michelle Graham. GO Biological Process: leaf development	SoyBase	N/A	ISS
GO:0048504	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of timing of organ formation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PF02365	PFAM	No apical meristem (NAM) protein	JGI		ISS
UniRef100_B8XS03	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: NO APICAL MERISTEM2 n=1 Tax=Pisum sativum RepID=B8XS03_PEA	SoyBase	E_val: 4.00E-151	ISS
UniRef100_I1LT65	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LT65_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma12g26190

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma12g26190 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g161700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g26190

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma12g26190

Limit To All Plant Sequences

>Glyma12g26190.1   sequence type=CDS   gene model=Glyma12g26190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATAGCTACTACCATCAACACCACAACCCTCACTTTGACAACAACAATGAACCACATTTACCTCCTGGCTTCAGATTCCACCCCACAGATGAAGAACTCATCACATACTACCTCCTCAAGAAGGTTCTAGATAGCTCCTTCACTGGCCGAGCCATAGTTGAAGTCGACCTCAACAAGTGCGAGCCATGGGAACTTCCTGAGAAAGCAAAGATGGGTGAGAAGGAATGGTACTTCTATAGCCTTCGTGACCGAAAGTACCCAACTGGGTTACGCACAAATAGAGCCACTGAAGCTGGTTATTGGAAAGCCACTGGAAAAGACAGAGAGATTTACAGCTCCAAAACTTGCTCACTCGTTGGCATGAAGAAAACCTTGGTTTTCTATAGAGGAAGGGCTCCAAAGGGTGAAAAGAGCAACTGGGTCATGCACGAGTATCGCTTAGAAGGCAAATTCGCTTACCACTATCTCTCTAGGAGCTCCAAGGAAGAGTGGGTGATCTCACGTGTGTTTCAGAAGAACACCACCGGCGGTGGCTCCACCGTGTCATCCGCCTCCGCCGCCACCACCGGTGGTAGTTCTAAGAAAACAAGAATGACCACATCAAACAATAGCAGCAACATGAGCCTCTGCCCCGAACCGGGTTCACCCTCTTCCATATACCTTCCGCCGCTTCTAGAATCTTCTCCTTACGCCGCGGCTGCGGCAACATTCAACGACCGCGAAAGATGCTCCTTCGACAGCGCCGCCAACAACAACCAAAGGGAGCACGTGTCCTGTTTCTCCACCATCTCCGGCGCCGCCTTCGACCACCTCGTTCCGTCGCCGGAGCCTCCGCTCGACCCTTCCGCTCGCTTTCATCGTAACAACAACAACAACGTCGGTGTCGGAATCTCCACCTTCCCGTGCCTCAGATCCTTGCACGACAACCTTAACCTTCCCTTCTTTTTCTCTCCAACGGGCCACATCAGCAGTGCTGAAGTGGCATCATTTGGTGCCGTTGGCAACTGGACGGCGGCACCGGAAGAGCACAGGATGGCTGACAGTGGCTCCGGCATGACGATTGTACCGTCCGAGTTGGATTGCATGTGGGACTATTGA

Predicted protein sequences of Glyma12g26190

Limit To All Plant Sequences

>Glyma12g26190.1   sequence type=predicted peptide   gene model=Glyma12g26190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDSYYHQHHNPHFDNNNEPHLPPGFRFHPTDEELITYYLLKKVLDSSFTGRAIVEVDLNKCEPWELPEKAKMGEKEWYFYSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTCSLVGMKKTLVFYRGRAPKGEKSNWVMHEYRLEGKFAYHYLSRSSKEEWVISRVFQKNTTGGGSTVSSASAATTGGSSKKTRMTTSNNSSNMSLCPEPGSPSSIYLPPLLESSPYAAAAATFNDRERCSFDSAANNNQREHVSCFSTISGAAFDHLVPSPEPPLDPSARFHRNNNNNVGVGISTFPCLRSLHDNLNLPFFFSPTGHISSAEVASFGAVGNWTAAPEEHRMADSGSGMTIVPSELDCMWDY*

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