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Report for Sequence Feature Glyma12g26170

Feature Type:gene_model
Chromosome:Gm12
Start:29438388
stop:29448097
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma12g26170
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G53970AT Annotation by Michelle Graham. TAIR10: Tyrosine transaminase family protein | chr5:21910676-21912594 FORWARD LENGTH=414 SoyBaseE_val: 0ISS
GO:0009058GO-bp Annotation by Michelle Graham. GO Biological Process: biosynthetic process SoyBaseN/AISS
GO:0010189GO-bp Annotation by Michelle Graham. GO Biological Process: vitamin E biosynthetic process SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0004838GO-mf Annotation by Michelle Graham. GO Molecular Function: L-tyrosine:2-oxoglutarate aminotransferase activity SoyBaseN/AISS
GO:0008483GO-mf Annotation by Michelle Graham. GO Molecular Function: transaminase activity SoyBaseN/AISS
KOG0259 KOG Tyrosine aminotransferase JGI ISS
PTHR11751Panther SUBGROUP I AMINOTRANSFERASE RELATED JGI ISS
PTHR11751:SF28Panther VALINE-PYRUVATE TRANSAMINASE-RELATED JGI ISS
PF00155PFAM Aminotransferase class I and II JGI ISS
UniRef100_I1LT64UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LT64_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q4ZJF7UniRef Annotation by Michelle Graham. Most informative UniRef hit: Tyrosine aminotransferase n=1 Tax=Glycine max RepID=Q4ZJF7_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma12g26170
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma12g26170 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.12g161500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma12g26170
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma12g26170
>Glyma12g26170.1   sequence type=CDS   gene model=Glyma12g26170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAAATGGTGTTGTGACCGTGAATAGAAAAAACCATGAATCCAAAGCTAATTCCACCATTACCATTAAGGGTTTCATGAGCCTTCTGATGAAAAGTGTAGATGAGAATGGTGATGGTAGCAAGAGAGTTATTTCTCTGGGTATGGGGGATCCAACTCTCACCACTTATTTTCCCATCTCAAATGTAGCTGAAGAAGCTGTTTCCGAAGCCCTTCAGTCACACAAGTTTCGTGGCTATGCTCCCACTGCAGGTCTTCCACAGGCCAGGATTGCAATTGCTGAATACCTGTCTCGTGACCTTCCTTACCAATTATCAAGTGAGGATGTTTATATCACTTGTGGATGCACACAAGCCATTGATGTGTCAGTGGCAATGCTTGCTCGCCCCGGTGCAAACATCTTGCTTCCAAGACCAGGCTTCCCACTCTATGAACTTAGTGCTTCATTTAGAGGGGTTGAAGTGAGGCATTATGATCTGCTTCCAGAGAAAGGTTGGGAGGTTGATCTAGATGTTGTTGAAGCTCTTGCTGATCAGAACACTGTTGCTTTGGTGATTATAAATCCTGGGAATCCTTGTGGGAATGTGTATAGTTACCATCATTTGGAGAAGATTGCTGAAACTGCAAAACGGATTGCAACAATTGTGATTGCTGATGAAGTTTATGGTCACCTTGCATTTGCGGGCAAGCCTTTTGTGCCAATGGGAATTTTTGGCTCTATTGTTCCTGTTCTGACTCTTGGCTCATTTTCTAAGAGATGGATAGTTCCTGGATGGAGGCTTGGTTGGTTTGTTACAAATGATCCATCTGGCACTTTTAGAAATCCAAAGGTAGATGAGCGAATTAAAAAGTACTTTGATCTTTTGGGAGGTCCTGCCACCTTCATCCAGGCAGCTCTACCTCAGATAATTGCGCATACTGAAGAGGTTTTCTTCAAGAAAACCATTGATAATTTGAGGCATGCTGCATATATATGCTGTAAAGAGTTAAAGGATAATCCATACATTATTTGCCCTTATAAACCAGAAGGGTCCATGGCTATGATGGTAAGACTAAACCTTTCACTTCTGGAGGATATTAGCGATGATATTGATTTTTGTTTCAAGCTTGCTAAGGAGGAATCCGTTATCATTCTTCCAGGAACTGCGGTAGGGCTGAATAATTGGATTCGTATTATTTTCGCTACTGATCCATTTGCTCTGTTAGAGGGTTTGAAGAGGGTAAAATCTTTTTGTGAAAGGCATGCAAGAAAGTGTTTAAAGACAACTGAATAA
Predicted protein sequences of Glyma12g26170
>Glyma12g26170.1   sequence type=predicted peptide   gene model=Glyma12g26170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MENGVVTVNRKNHESKANSTITIKGFMSLLMKSVDENGDGSKRVISLGMGDPTLTTYFPISNVAEEAVSEALQSHKFRGYAPTAGLPQARIAIAEYLSRDLPYQLSSEDVYITCGCTQAIDVSVAMLARPGANILLPRPGFPLYELSASFRGVEVRHYDLLPEKGWEVDLDVVEALADQNTVALVIINPGNPCGNVYSYHHLEKIAETAKRIATIVIADEVYGHLAFAGKPFVPMGIFGSIVPVLTLGSFSKRWIVPGWRLGWFVTNDPSGTFRNPKVDERIKKYFDLLGGPATFIQAALPQIIAHTEEVFFKKTIDNLRHAAYICCKELKDNPYIICPYKPEGSMAMMVRLNLSLLEDISDDIDFCFKLAKEESVIILPGTAVGLNNWIRIIFATDPFALLEGLKRVKSFCERHARKCLKTTE*






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