Glyma12g25950 - SoyBase

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Report for Sequence Feature Glyma12g25950

Feature Type:	gene_model
Chromosome:	Gm12
Start:	29274954
stop:	29277149
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g25950

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G54500	AT	Annotation by Michelle Graham. TAIR10: flavodoxin-like quinone reductase 1 \| chr5:22124674-22126256 FORWARD LENGTH=204	SoyBase	E_val: 2.00E-127	ISS
GO:0006970	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to osmotic stress	SoyBase	N/A	ISS
GO:0009733	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus	SoyBase	N/A	ISS
GO:0045892	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0046686	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cadmium ion	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0005774	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0010181	GO-mf	Annotation by Michelle Graham. GO Molecular Function: FMN binding	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
GO:0016655	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	SoyBase	N/A	ISS
KOG3135	KOG	1,4-benzoquinone reductase-like; Trp repressor binding protein-like/protoplast-secreted protein	JGI		ISS
PF03358	PFAM	NADPH-dependent FMN reductase	JGI		ISS
UniRef100_B9T876	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Minor allergen Alt a, putative n=1 Tax=Ricinus communis RepID=B9T876_RICCO	SoyBase	E_val: 3.00E-130	ISS
UniRef100_I1LT63	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LT63_SOYBN	SoyBase	E_val: 2.00E-145	ISS

Expression Patterns of Glyma12g25950

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma12g25950 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g161400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g25950

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma12g25950

Limit To All Plant Sequences

>Glyma12g25950.2   sequence type=transcript   gene model=Glyma12g25950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCTTGTTTATGTATGGTACTAACCCTAAGTATTCAATTTTATCAATGCTTAAAGTTGCAAACACCGAGCAAAGTTCACTCCAAAGCCCACGTTCAAATTTCCTTTTGACAGATAAAAAAATGTTAGTTATTGTATTACCCCTGTTGCATTGTTAGTTATGGTTATTGCTTTCATTGTCATTGTTCCAACTAGGTTGAGTTCAATTTTGTCTTCACTATGATCATATTTTCCTTTGGTTCATGACCTCTTAGGACCTCAACCTCTGCTCTTCCAATGAAACCATGCAACAAGTTTTCCTATATTCTGTTGTCTTGCGCAATTAAGACAATACTTCCCATAGATTTTAAAATTTGCTCAGTTAAGTTAATCAAAAGAACATGAATGTACATGAGCAGGTACCAGAGACATTGCCAGAAGAGGTGCTTGGCAAAATGAGAGCACCACCCAAGAGTGATGTGCCAATTATTACCCCCAATGAACTCTCTGAGGCTGATGGCTTTGTCTTTGGCTTCCCCACAAGATTTGGAATGATGGCAGCGCAGTTCAAAGCATTTCTGGATGCAACTGGAGGCTTATGGAAAACACAACAGCTTGCAGGCAAGCCTGCTGGAATCTTCTACAGCACTAGTTCCCAAGGTGGTGGACAAGAAACAACAGCGCTTACTGCTATAACTCAGCTGGTTCATCATGGAATGCTATTTGTTCCGATTGGATACACATTTGGTGCTGGAATGTTCGATATGGAGGAACTCAAAGGTGGAAGTCCATATGGTTCAGGAACTTATGCAGGTGATGGTTCAAGACAACCAACTAAGCTTGAGTTGGAGCAAGCATTCCACCAAGGCAAGTATATCGCCAGCATCACAAAGAAGCTCAAGGAAGCTGCATAATGTTGTTGAGTCAATTAAGATTTACAATTAAAGGATGAATGAGAATGATTATTTTTTAGTCCTAGAATGTGTTGAGTTCTGTTTTTTAGGTGGTTGCATGATGTTATAGTTTTTTATATTTAAAAAACAAAATACTTTGTATTGAGTTCTATCCTTATGTTACGCGGTGAAGTGTGGTTATTGAAATTTATTAAATAAAGGAAGTTTGTTTTGTCTTTGTCC

Coding sequences of Glyma12g25950

Limit To All Plant Sequences

>Glyma12g25950.1   sequence type=CDS   gene model=Glyma12g25950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGTCCAAGTTTATATTGTGTATTACTCAATGTACAGGCATGTGGATAGACTAGCGGAAGAAATAAAGAAAGGAGTTGATTCTGTAGAAGGTGTTGAGGCCAAACTATGGCAGGTACCAGAGACATTGCCAGAAGAGGTGCTTGGCAAAATGAGAGCACCACCCAAGAGTGATGTGCCAATTATTACCCCCAATGAACTCTCTGAGGCTGATGGCTTTGTCTTTGGCTTCCCCACAAGATTTGGAATGATGGCAGCGCAGTTCAAAGCATTTCTGGATGCAACTGGAGGCTTATGGAAAACACAACAGCTTGCAGGCAAGCCTGCTGGAATCTTCTACAGCACTAGTTCCCAAGGTGGTGGACAAGAAACAACAGCGCTTACTGCTATAACTCAGCTGGTTCATCATGGAATGCTATTTGTTCCGATTGGATACACATTTGGTGCTGGAATGTTCGATATGGAGGAACTCAAAGGTGGAAGTCCATATGGTTCAGGAACTTATGCAGGTGATGGTTCAAGACAACCAACTAAGCTTGAGTTGGAGCAAGCATTCCACCAAGGCAAGTATATCGCCAGCATCACAAAGAAGCTCAAGGAAGCTGCATAA

>Glyma12g25950.2   sequence type=CDS   gene model=Glyma12g25950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATGTACATGAGCAGGTACCAGAGACATTGCCAGAAGAGGTGCTTGGCAAAATGAGAGCACCACCCAAGAGTGATGTGCCAATTATTACCCCCAATGAACTCTCTGAGGCTGATGGCTTTGTCTTTGGCTTCCCCACAAGATTTGGAATGATGGCAGCGCAGTTCAAAGCATTTCTGGATGCAACTGGAGGCTTATGGAAAACACAACAGCTTGCAGGCAAGCCTGCTGGAATCTTCTACAGCACTAGTTCCCAAGGTGGTGGACAAGAAACAACAGCGCTTACTGCTATAACTCAGCTGGTTCATCATGGAATGCTATTTGTTCCGATTGGATACACATTTGGTGCTGGAATGTTCGATATGGAGGAACTCAAAGGTGGAAGTCCATATGGTTCAGGAACTTATGCAGGTGATGGTTCAAGACAACCAACTAAGCTTGAGTTGGAGCAAGCATTCCACCAAGGCAAGTATATCGCCAGCATCACAAAGAAGCTCAAGGAAGCTGCATAA

Predicted protein sequences of Glyma12g25950

Limit To All Plant Sequences

>Glyma12g25950.1   sequence type=predicted peptide   gene model=Glyma12g25950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAVQVYIVYYSMYRHVDRLAEEIKKGVDSVEGVEAKLWQVPETLPEEVLGKMRAPPKSDVPIITPNELSEADGFVFGFPTRFGMMAAQFKAFLDATGGLWKTQQLAGKPAGIFYSTSSQGGGQETTALTAITQLVHHGMLFVPIGYTFGAGMFDMEELKGGSPYGSGTYAGDGSRQPTKLELEQAFHQGKYIASITKKLKEAA*

>Glyma12g25950.2   sequence type=predicted peptide   gene model=Glyma12g25950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNVHEQVPETLPEEVLGKMRAPPKSDVPIITPNELSEADGFVFGFPTRFGMMAAQFKAFLDATGGLWKTQQLAGKPAGIFYSTSSQGGGQETTALTAITQLVHHGMLFVPIGYTFGAGMFDMEELKGGSPYGSGTYAGDGSRQPTKLELEQAFHQGKYIASITKKLKEAA*

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