Glyma12g25500 - SoyBase

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Report for Sequence Feature Glyma12g25500

Feature Type:	gene_model
Chromosome:	Gm12
Start:	28499721
stop:	28508358
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g25500

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G24020	AT	Annotation by Michelle Graham. TAIR10: Uncharacterised BCR, YbaB family COG0718 \| chr2:10217869-10219269 REVERSE LENGTH=182	SoyBase	E_val: 1.00E-76	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0019243	GO-bp	Annotation by Michelle Graham. GO Biological Process: methylglyoxal catabolic process to D-lactate	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009535	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0009941	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope	SoyBase	N/A	ISS
PF02575	PFAM	Uncharacterised BCR, YbaB family COG0718	JGI		ISS
UniRef100_G7JFM1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Complex interacting protein n=1 Tax=Medicago truncatula RepID=G7JFM1_MEDTR	SoyBase	E_val: 3.00E-74	ISS
UniRef100_I1LT58	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1LT58_SOYBN	SoyBase	E_val: 5.00E-143	ISS

Expression Patterns of Glyma12g25500

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma12g25500 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g156200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g25500

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma12g25500

Limit To All Plant Sequences

>Glyma12g25500.2   sequence type=transcript   gene model=Glyma12g25500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTAATTGAATCCTAGGTTTATTTTGATGTGAGTAATTGAGAGCTTGGTAAGGGTTTTCATTCAAAGAGTTGTTTTTTAAATCAGAATGCAGGAACGGCTGGATTCAAAAATTAACCTTGATTGAAAATGTTCTTATTTTATAATATAGCTATGAATTTGGACATTATAAGAGGCTAGTTTGAGAATTGTGCAAGGTGAATCCATATTTGCTTTTGATTCTCAAGATTGAATTGTTATCCAAAAGCTATTCATTGTTGGCTGTTGTTAACAGGTAAACTAAGCTTCAATTCAAATATAGTTGACATGAAGATATTATCTCGATGTGGTTGTCAGAAAGTTGGAAATGACCAAAGATGTTTCCGATTATATGCCCTATTTGGAGGAAAAAAGGACAATAGTGGGAAAAGTGATGATGCTCCTTCTAAGGCAGGAATTCTAGGAAACATGCAAAATCTTTATGAGACTGTGAAGAAGGCACAAATGGTTGTCCAAGTTGAAGCAGTGCGGGTGCAGAAAGAACTCGCAGCAGCAGAGTTTGATGGTTATTGTGAGGGTGAGTTAGTAAAGGTAACGCTGTCGGGGAACCAGCAACCTGTAAGAACGGAAATTACTGAGGCAGCTATGGAATTGGGACCTGAAAAACTTTCTCTTTTAATCACTGAGGCATACAAGGATGCACACCAAAAGAGTGTCCAGGCCATGAAGGAAAGGATGAATGATCTTGCACAGAGCTTAGGAATGCCACCAGGGCTTAGTGAAGGATTGAAGTGATGAATACTTTTATTCTAGACTTAGGACTTGGGCCTCAGGTTTGCACAAACATGGCAGGATAGACTTATTTGTTTTCTTCATTTACTATGGCTGTTAATTTGCAATCTTGGTTATTAAGAAAGAAATGTAATCCTGGAATTATTTGAAATGGTGGTGGAGCTTCAATTTTTTCACATTTTACTCGTGTTATTTTTGTTTGAAAGGTGAAAATTCTGTTGTGTCCTTATCCTATTATCCAGTTTTATCGATAGAGAAAAACTTGTGTCTGGTTGAGGTTTCACCAGCTGAAACTGAATAAAGTGAAAAACCTTAGGCGAGGCATTAGAGTCTATAAATTTGTTGCCTTACCTTTTGTACGCGAGATTTGAATTCACTGAATAGTTGCAAGAAAGCGAG

Coding sequences of Glyma12g25500

Limit To All Plant Sequences

>Glyma12g25500.1   sequence type=CDS   gene model=Glyma12g25500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACAACCACGCCCTGTGTAACTGGTGCCTTGTCAAACGCGGTCGGATTCCGTGACTGGAAAAAGCATGTCCCTTTATCAGCTTCTCTCTGTAAACTAAGCTTCAATTCAAATATAGTTGACATGAAGATATTATCTCGATGTGGTTGTCAGAAAGTTGGAAATGACCAAAGATGTTTCCGATTATATGCCCTATTTGGAGGAAAAAAGGACAATAGTGGGAAAAGTGATGATGCTCCTTCTAAGGCAGGAATTCTAGGAAACATGCAAAATCTTTATGAGACTGTGAAGAAGGCACAAATGGTTGTCCAAGTTGAAGCAGTGCGGGTGCAGAAAGAACTCGCAGCAGCAGAGTTTGATGGTTATTGTGAGGGTGAGTTAGTAAAGGTAACGCTGTCGGGGAACCAGCAACCTGTAAGAACGGAAATTACTGAGGCAGCTATGGAATTGGGACCTGAAAAACTTTCTCTTTTAATCACTGAGGCATACAAGGATGCACACCAAAAGAGTGTCCAGGCCATGAAGGAAAGGATGAATGATCTTGCACAGAGCTTAGGAATGCCACCAGGGCTTAGTGAAGGATTGAAGTGA

>Glyma12g25500.2   sequence type=CDS   gene model=Glyma12g25500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGATATTATCTCGATGTGGTTGTCAGAAAGTTGGAAATGACCAAAGATGTTTCCGATTATATGCCCTATTTGGAGGAAAAAAGGACAATAGTGGGAAAAGTGATGATGCTCCTTCTAAGGCAGGAATTCTAGGAAACATGCAAAATCTTTATGAGACTGTGAAGAAGGCACAAATGGTTGTCCAAGTTGAAGCAGTGCGGGTGCAGAAAGAACTCGCAGCAGCAGAGTTTGATGGTTATTGTGAGGGTGAGTTAGTAAAGGTAACGCTGTCGGGGAACCAGCAACCTGTAAGAACGGAAATTACTGAGGCAGCTATGGAATTGGGACCTGAAAAACTTTCTCTTTTAATCACTGAGGCATACAAGGATGCACACCAAAAGAGTGTCCAGGCCATGAAGGAAAGGATGAATGATCTTGCACAGAGCTTAGGAATGCCACCAGGGCTTAGTGAAGGATTGAAGTGA

Predicted protein sequences of Glyma12g25500

Limit To All Plant Sequences

>Glyma12g25500.1   sequence type=predicted peptide   gene model=Glyma12g25500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTTTPCVTGALSNAVGFRDWKKHVPLSASLCKLSFNSNIVDMKILSRCGCQKVGNDQRCFRLYALFGGKKDNSGKSDDAPSKAGILGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELVKVTLSGNQQPVRTEITEAAMELGPEKLSLLITEAYKDAHQKSVQAMKERMNDLAQSLGMPPGLSEGLK*

>Glyma12g25500.2   sequence type=predicted peptide   gene model=Glyma12g25500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKILSRCGCQKVGNDQRCFRLYALFGGKKDNSGKSDDAPSKAGILGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELVKVTLSGNQQPVRTEITEAAMELGPEKLSLLITEAYKDAHQKSVQAMKERMNDLAQSLGMPPGLSEGLK*

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