Glyma12g25470 - SoyBase

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Report for Sequence Feature Glyma12g25470

Feature Type:	gene_model
Chromosome:	Gm12
Start:	28415035
stop:	28415304
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g25470

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G65290	AT	Annotation by Michelle Graham. TAIR10: LMBR1-like membrane protein \| chr5:26089814-26093617 FORWARD LENGTH=548	SoyBase	E_val: 2.00E-10	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0008284	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of cell proliferation	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_G7J381	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: LMBR1 domain-containing protein-like protein n=1 Tax=Medicago truncatula RepID=G7J381_MEDTR	SoyBase	E_val: 4.00E-13	ISS
UniRef100_UPI000233D026	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233D026 related cluster n=1 Tax=unknown RepID=UPI000233D026	SoyBase	E_val: 4.00E-27	ISS

Expression Patterns of Glyma12g25470

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma12g25470 not represented in the dataset	Glyma12g25470 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma12g25470 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g156000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g25470

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma12g25470

Limit To All Plant Sequences

>Glyma12g25470.1   sequence type=CDS   gene model=Glyma12g25470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACTTATGTATTGGAGGCATTTGAATTGGAAGATACAATAAAGAATTTTGATCGCCACAACTCAACTAAATGGGAATGTAATTCAAGCATTAGACCTGCTCAAACTGGCAAGTTGGGGTCCCTATTTGATACTTTAGGTAATAATGAGAATTATTGGTGA

Predicted protein sequences of Glyma12g25470

Limit To All Plant Sequences

>Glyma12g25470.1   sequence type=predicted peptide   gene model=Glyma12g25470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTYVLEAFELEDTIKNFDRHNSTKWECNSSIRPAQTGKLGSLFDTLGNNENYW*

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