Glyma12g25240 - SoyBase

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Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma12g25240

Feature Type:	gene_model
Chromosome:	Gm12
Start:	28103972
stop:	28112659
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g25240

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G15354	AT	Annotation by Michelle Graham. TAIR10: SPA1-related 3 \| chr3:5169327-5172480 REVERSE LENGTH=837	SoyBase	E_val: 0	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005834	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: heterotrimeric G-protein complex	SoyBase	N/A	ISS
GO:0080008	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: CUL4-RING ubiquitin ligase complex	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004871	GO-mf	Annotation by Michelle Graham. GO Molecular Function: signal transducer activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
GO:0042802	GO-mf	Annotation by Michelle Graham. GO Molecular Function: identical protein binding	SoyBase	N/A	ISS
KOG0265	KOG	U5 snRNP-specific protein-like factor and related proteins	JGI		ISS
PTHR22847	Panther	WD40 REPEAT PROTEIN	JGI		ISS
PTHR22847:SF121	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00069	PFAM	Protein kinase domain	JGI		ISS
PF00400	PFAM	WD domain, G-beta repeat	JGI		ISS
UniRef100_G7IRA7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: SPA1-like protein n=1 Tax=Medicago truncatula RepID=G7IRA7_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233D782	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233D782 related cluster n=1 Tax=unknown RepID=UPI000233D782	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma12g25240

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma12g25240 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g155700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g25240

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma12g25240

Limit To All Plant Sequences

>Glyma12g25240.2   sequence type=transcript   gene model=Glyma12g25240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTCAATGTTGCCCCCTAACAAAAGTTTCTTTTTTGACTTCTGTTGAATTGTTTTATGTTTACCAGGATGAATTTCATGCTGATTAAAGTTCATGAATTCACGTTGGTAACTTTGCAGGAAAGTTTGTCAATGCGTTCTGTGGCAACAAGCTGAGAAATTGTTCTTGAAGTTGGCCTATTGAGAATCTCTGTGGCATTTTTGGGACCACTGAAATGAGATTTTTTGAGTTATAATGGTGGAGTAGGTGCTCGAGTGTGATACATGTTGGATAATTACCGTACACTATACCTTGGCATTCATGCAACTCTTAATGGATGAAAATGAATGGTTCTTCTTCTGGGTTTTCTTGGCAGAAGATTTTCAGTTCTAGGAGCTTAAATTTTTTTGGAGGCTTTGATAGGTACTCACAAAGGCACCACAAAATTCTAGCTTCAAAAACCAAAGAGACAGGGTTATGTTGTGTTTGCTCAAGGTGACGAGCAGAAAAACCTTGGTGGTCTTTCTGGTGTATGTGAGGATAAAGTAGGGGCTAAACTTGACACCCTTTTGTTTGTGCTATAGAATGGGTGATATTAGCTTGAGGCTATGGTTGGATAAACCCGAACGATCAGTGAATGTCTCTGAATGCTTGCACATATTTAGGGAAATAGTAGAAATTGTTCATGTGGCTCATTCTCAAGGAATTGTTGTTCATAATGTGAGGCCCTCCTGCTTTGTCATGTCATCTTTCAACCATGTCTCGTTTATTGAGTCAGCAACTTGTTCCGATTCTGGCTCAGATACTTTAGAAGAAGCTGTTGAGATCAAAACTCCAACACCTACTCCTAGCTATGATATGCATCAACAGAGATGTTTAGGAAGTGAAGATTTTGTGCCTGTCAAGACTTCAACAGCTTCTTTGACAGACTCTAGTTGCATGTTGTCAAGTTTGGTGTTTGTGGCACCTGCATCATTAATAGATGATACAGAAGAAAATAAAATGAAAAACAGAAGAAAGGATGAGGAAGTTGCAGTAAAGAAGCAATCATTTTCAACAAAACAGGTACTGCAGATGGAGGCGAGTTGGTATACTAGTCCTGAAGAGTTTGCTGGTGCTTCACCTTCCTGTGCTTCAGACGTTTACCGGTTGGGAGTTCTTCTTTTTGAGCTATTTTGTCCACTCATCTCAAGAGAAGAAAAGAGCAGAACCATGTCCGGCCTAAGACATAGAGTTCTTCCTCCACAGTTACTTTTAAAATGGCCTAAAGAAGCTTCATTTTGCTTGTGGTTATTACATCCTGAGCCTAATAGTCGTCCAACAATAGGGCAGTTGTTGCAGAGTGAGTTTCTTAATGAACCAAGAGATGATATAGAAAACTGTGAGGCAGCGGTAGAAGTTAGAGAAAGGATAGATGATCAGGAGTTGTTGCAAGAATTCCTTTCATTAATTCAACAGAAAAAAGAGGAAGCTGCTGAGAAGTTACAGCATACTATCTCATTTCTGTGTTCAGATATTGAAGAAGCGACTAAGCAGAAAACTCTATTTAATGAGATAACTGGCACTGGACTAGATGATTGTACCACATCGACTTTCCCGTCCATTACAGTTGTCGATAATGAGGAATCTGCTTGTCTAGGGACCAGAAAACGGGTCAGAACTATTCCGTGTGTTGATGACACTGAAGGGATTGATAATAACATGAGTGATGATCAGAAAAATGACAGGAGTATTCTTTCAAAAACTCCACGGTTTTTGAATAATTTACAGAAACTAGAGTCAGCATACTTTTTGACACGATGCAAATCAGCCTATTCCTCAGGGAAACTTGCGGTTCAACATTCACCTATTGGTACTGATGAAAGGAGTTGTGTCAATAAAGTAGCATTAAAAGAGAAGTTCAGGGAGGGAAAAAGTCCTTGGACAAATCCTTTCCTTGAGGGTTTGAGCAAGTACCTATCTTTCAGTAAGTTAAAGGTTAAGGCTGACCTGAAACAAGGGGATCTTTTGCAGTCTTCCAACCTGGTATGCTCACTCAGTTTTGATCGCGATGCAGAATATTTTGCTACTGCAGGAGTAAACAAGAAGATTAAAGTTTTTGAATGTAACACTACCATAAATGAGGATCGTGATATCCACTATCCAGTAGTTGAGATGGTTAGCCGGTCAACATTGAGTAGTACATGTTGGAATACTTACATCAAAAGTCAAATTGCTTCAAGTAACTTTGAAGGTGTTGTACAGTTATGGGATGTGACAAGAAGTCACGTGCAGTCTGAAATGAGGGAGCATGAGCAAAGGGTATGGTCTATTGATTTCTCATCAGCGGATCCGACGTTGTTAGCAAGTGGGAGTGATGACGGTTCTGTCAAGCTATGGAATATCAATCAGAATTTCGTGGGGTTGTCTGTATCTGATGGTTACATTGCTACTGGTTCAGAGACAAACGAGGTGTTCATATACCACAAGGCTTTTCCCATGCCAGCATTATCTTTCAAATTTTACAGTAGTGACCCTCTTTTTGGGAATGAAGAGGATGATTCTACACAGTTCATCACTTCTGTTTGTTGGCGCGGTCAGTCCTCCACCTTACTTGCTGCAAATTCCACAGGAAATGTCAAAATTCTGGAGATGACTTGAGTTGGCCTTTAGTTGGGAATAAAGATACAATTCTTTGGTACACAAGGTTAAAGAATCATGTTAATGGTTAGCTTTTTGTTTCCAAAAAAAGCTATGGAGAAGTGTATACAAATTCCATGATTACTACTTGTGACAAAATTTTACATTAGATCACAGAAGAAGCAGTGAGAGAAAAAAGTGAGATTGATCTCTTCAAGAATGTTTTATAGATAAAATTCTATATTAGAAGAAAAGGAAAGTGAAAATAAATATTAGATTGTCTTATAAAATAGTGGGACAGAGGAAGAGAGCGGGGCAGAGAAAAGACAGAGAAAGTGCATAGTTTTGTCTTTGAATATTTTGTATTTAGGGAAAAAATTAAGTTGTTCCGGGCTTTCCCATAGTAACAAGAAAATAAGATTTTGTTCTTTCCTTTCTTACTTGTCTTGCCACTCTTTTTGAAAATAAGATTTTGTTCTTTCCT

Coding sequences of Glyma12g25240

Limit To All Plant Sequences

>Glyma12g25240.1   sequence type=CDS   gene model=Glyma12g25240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTGATATTAGCTTGAGGCTATGGTTGGATAAACCCGAACGATCAGTGAATGTCTCTGAATGCTTGCACATATTTAGGGAAATAGTAGAAATTGTTCATGTGGCTCATTCTCAAGGAATTGTTGTTCATAATGTGAGGCCCTCCTGCTTTGTCATGTCATCTTTCAACCATGTCTCGTTTATTGAGTCAGCAACTTGTTCCGATTCTGGCTCAGATACTTTAGAAGAAGCTGTTGAGATCAAAACTCCAACACCTACTCCTAGCTATGATATGCATCAACAGAGATGTTTAGGAAGTGAAGATTTTGTGCCTGTCAAGACTTCAACAGCTTCTTTGACAGACTCTAGTTGCATGTTGTCAAGTTTGGTGTTTGTGGCACCTGCATCATTAATAGATGATACAGAAGAAAATAAAATGAAAAACAGAAGAAAGGATGAGGAAGTTGCAGTAAAGAAGCAATCATTTTCAACAAAACAGGTACTGCAGATGGAGGCGAGTTGGTATACTAGTCCTGAAGAGTTTGCTGGTGCTTCACCTTCCTGTGCTTCAGACGTTTACCGGTTGGGAGTTCTTCTTTTTGAGCTATTTTGTCCACTCATCTCAAGAGAAGAAAAGAGCAGAACCATGTCCGGCCTAAGACATAGAGTTCTTCCTCCACAGTTACTTTTAAAATGGCCTAAAGAAGCTTCATTTTGCTTGTGGTTATTACATCCTGAGCCTAATAGTCGTCCAACAATAGGGCAGTTGTTGCAGAGTGAGTTTCTTAATGAACCAAGAGATGATATAGAAAACTGTGAGGCAGCGGTAGAAGTTAGAGAAAGGATAGATGATCAGGAGTTGTTGCAAGAATTCCTTTCATTAATTCAACAGAAAAAAGAGGAAGCTGCTGAGAAGTTACAGCATACTATCTCATTTCTGTGTTCAGATATTGAAGAAGCGACTAAGCAGAAAACTCTATTTAATGAGATAACTGGCACTGGACTAGATGATTGTACCACATCGACTTTCCCGTCCATTACAGTTGTCGATAATGAGGAATCTGCTTGTCTAGGGACCAGAAAACGGGTCAGAACTATTCCGTGTGTTGATGACACTGAAGGGATTGATAATAACATGAGTGATGATCAGAAAAATGACAGGAGTATTCTTTCAAAAACTCCACGGTTTTTGAATAATTTACAGAAACTAGAGTCAGCATACTTTTTGACACGATGCAAATCAGCCTATTCCTCAGGGAAACTTGCGGTTCAACATTCACCTATTGGTACTGATGAAAGGAGTTGTGTCAATAAAGTAGCATTAAAAGAGAAGTTCAGGGAGGGAAAAAGTCCTTGGACAAATCCTTTCCTTGAGGGTTTGAGCAAGTACCTATCTTTCAGTAAGTTAAAGGTTAAGGCTGACCTGAAACAAGGGGATCTTTTGCAGTCTTCCAACCTGGTATGCTCACTCAGTTTTGATCGCGATGCAGAATATTTTGCTACTGCAGGAGTAAACAAGAAGATTAAAGTTTTTGAATGTAACACTACCATAAATGAGGATCGTGATATCCACTATCCAGTAGTTGAGATGGTTAGCCGGTCAACATTGAGTAGTACATGTTGGAATACTTACATCAAAAGTCAAATTGCTTCAAGTAACTTTGAAGGTGTTGTACAGTTATGGGATGTGACAAGAAGTCACGTGCAGTCTGAAATGAGGGAGCATGAGCAAAGGGTATGGTCTATTGATTTCTCATCAGCGGATCCGACGTTGTTAGCAAGTGGGAGTGATGACGGTTCTGTCAAGCTATGGAATATCAATCAGGGAATTAGTGTTGGTACCATCAAAACAAAGGCAAATGTGTGTTGTGTTCAGTTTCCCCTTGAATTTGCTCATTCCCTTGCATTTGGTTCGGCAGATCATCGGATATATTACTATGATCTTCGCAACCTGAAAGTGCCTCTTTGTACATTGGTTGGACACGATAAGACAGTGAGCTACATCAAGTTTGTAGACACCATGAGCCTAGTCTCTGCATCCACAGATAACACTTTGAAGCTTTGGGATTTGTCCTTGTGTGCTTCTCGAGTTATAGACTCACCAATTCAATCATTCACTGGTCATATGAATGTTAAGAATTTCGTGGGGTTGTCTGTATCTGATGGTTACATTGCTACTGGTTCAGAGACAAACGAGGTGTTCATATACCACAAGGCTTTTCCCATGCCAGCATTATCTTTCAAATTTTACAGTAGTGACCCTCTTTTTGGGAATGAAGAGGATGATTCTACACAGTTCATCACTTCTGTTTGTTGGCGCGGTCAGTCCTCCACCTTACTTGCTGCAAATTCCACAGGAAATGTCAAAATTCTGGAGATGACTTGA

>Glyma12g25240.2   sequence type=CDS   gene model=Glyma12g25240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTGATATTAGCTTGAGGCTATGGTTGGATAAACCCGAACGATCAGTGAATGTCTCTGAATGCTTGCACATATTTAGGGAAATAGTAGAAATTGTTCATGTGGCTCATTCTCAAGGAATTGTTGTTCATAATGTGAGGCCCTCCTGCTTTGTCATGTCATCTTTCAACCATGTCTCGTTTATTGAGTCAGCAACTTGTTCCGATTCTGGCTCAGATACTTTAGAAGAAGCTGTTGAGATCAAAACTCCAACACCTACTCCTAGCTATGATATGCATCAACAGAGATGTTTAGGAAGTGAAGATTTTGTGCCTGTCAAGACTTCAACAGCTTCTTTGACAGACTCTAGTTGCATGTTGTCAAGTTTGGTGTTTGTGGCACCTGCATCATTAATAGATGATACAGAAGAAAATAAAATGAAAAACAGAAGAAAGGATGAGGAAGTTGCAGTAAAGAAGCAATCATTTTCAACAAAACAGGTACTGCAGATGGAGGCGAGTTGGTATACTAGTCCTGAAGAGTTTGCTGGTGCTTCACCTTCCTGTGCTTCAGACGTTTACCGGTTGGGAGTTCTTCTTTTTGAGCTATTTTGTCCACTCATCTCAAGAGAAGAAAAGAGCAGAACCATGTCCGGCCTAAGACATAGAGTTCTTCCTCCACAGTTACTTTTAAAATGGCCTAAAGAAGCTTCATTTTGCTTGTGGTTATTACATCCTGAGCCTAATAGTCGTCCAACAATAGGGCAGTTGTTGCAGAGTGAGTTTCTTAATGAACCAAGAGATGATATAGAAAACTGTGAGGCAGCGGTAGAAGTTAGAGAAAGGATAGATGATCAGGAGTTGTTGCAAGAATTCCTTTCATTAATTCAACAGAAAAAAGAGGAAGCTGCTGAGAAGTTACAGCATACTATCTCATTTCTGTGTTCAGATATTGAAGAAGCGACTAAGCAGAAAACTCTATTTAATGAGATAACTGGCACTGGACTAGATGATTGTACCACATCGACTTTCCCGTCCATTACAGTTGTCGATAATGAGGAATCTGCTTGTCTAGGGACCAGAAAACGGGTCAGAACTATTCCGTGTGTTGATGACACTGAAGGGATTGATAATAACATGAGTGATGATCAGAAAAATGACAGGAGTATTCTTTCAAAAACTCCACGGTTTTTGAATAATTTACAGAAACTAGAGTCAGCATACTTTTTGACACGATGCAAATCAGCCTATTCCTCAGGGAAACTTGCGGTTCAACATTCACCTATTGGTACTGATGAAAGGAGTTGTGTCAATAAAGTAGCATTAAAAGAGAAGTTCAGGGAGGGAAAAAGTCCTTGGACAAATCCTTTCCTTGAGGGTTTGAGCAAGTACCTATCTTTCAGTAAGTTAAAGGTTAAGGCTGACCTGAAACAAGGGGATCTTTTGCAGTCTTCCAACCTGGTATGCTCACTCAGTTTTGATCGCGATGCAGAATATTTTGCTACTGCAGGAGTAAACAAGAAGATTAAAGTTTTTGAATGTAACACTACCATAAATGAGGATCGTGATATCCACTATCCAGTAGTTGAGATGGTTAGCCGGTCAACATTGAGTAGTACATGTTGGAATACTTACATCAAAAGTCAAATTGCTTCAAGTAACTTTGAAGGTGTTGTACAGTTATGGGATGTGACAAGAAGTCACGTGCAGTCTGAAATGAGGGAGCATGAGCAAAGGGTATGGTCTATTGATTTCTCATCAGCGGATCCGACGTTGTTAGCAAGTGGGAGTGATGACGGTTCTGTCAAGCTATGGAATATCAATCAGAATTTCGTGGGGTTGTCTGTATCTGATGGTTACATTGCTACTGGTTCAGAGACAAACGAGGTGTTCATATACCACAAGGCTTTTCCCATGCCAGCATTATCTTTCAAATTTTACAGTAGTGACCCTCTTTTTGGGAATGAAGAGGATGATTCTACACAGTTCATCACTTCTGTTTGTTGGCGCGGTCAGTCCTCCACCTTACTTGCTGCAAATTCCACAGGAAATGTCAAAATTCTGGAGATGACTTGA

Predicted protein sequences of Glyma12g25240

Limit To All Plant Sequences

>Glyma12g25240.1   sequence type=predicted peptide   gene model=Glyma12g25240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGDISLRLWLDKPERSVNVSECLHIFREIVEIVHVAHSQGIVVHNVRPSCFVMSSFNHVSFIESATCSDSGSDTLEEAVEIKTPTPTPSYDMHQQRCLGSEDFVPVKTSTASLTDSSCMLSSLVFVAPASLIDDTEENKMKNRRKDEEVAVKKQSFSTKQVLQMEASWYTSPEEFAGASPSCASDVYRLGVLLFELFCPLISREEKSRTMSGLRHRVLPPQLLLKWPKEASFCLWLLHPEPNSRPTIGQLLQSEFLNEPRDDIENCEAAVEVRERIDDQELLQEFLSLIQQKKEEAAEKLQHTISFLCSDIEEATKQKTLFNEITGTGLDDCTTSTFPSITVVDNEESACLGTRKRVRTIPCVDDTEGIDNNMSDDQKNDRSILSKTPRFLNNLQKLESAYFLTRCKSAYSSGKLAVQHSPIGTDERSCVNKVALKEKFREGKSPWTNPFLEGLSKYLSFSKLKVKADLKQGDLLQSSNLVCSLSFDRDAEYFATAGVNKKIKVFECNTTINEDRDIHYPVVEMVSRSTLSSTCWNTYIKSQIASSNFEGVVQLWDVTRSHVQSEMREHEQRVWSIDFSSADPTLLASGSDDGSVKLWNINQGISVGTIKTKANVCCVQFPLEFAHSLAFGSADHRIYYYDLRNLKVPLCTLVGHDKTVSYIKFVDTMSLVSASTDNTLKLWDLSLCASRVIDSPIQSFTGHMNVKNFVGLSVSDGYIATGSETNEVFIYHKAFPMPALSFKFYSSDPLFGNEEDDSTQFITSVCWRGQSSTLLAANSTGNVKILEMT*

>Glyma12g25240.2   sequence type=predicted peptide   gene model=Glyma12g25240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGDISLRLWLDKPERSVNVSECLHIFREIVEIVHVAHSQGIVVHNVRPSCFVMSSFNHVSFIESATCSDSGSDTLEEAVEIKTPTPTPSYDMHQQRCLGSEDFVPVKTSTASLTDSSCMLSSLVFVAPASLIDDTEENKMKNRRKDEEVAVKKQSFSTKQVLQMEASWYTSPEEFAGASPSCASDVYRLGVLLFELFCPLISREEKSRTMSGLRHRVLPPQLLLKWPKEASFCLWLLHPEPNSRPTIGQLLQSEFLNEPRDDIENCEAAVEVRERIDDQELLQEFLSLIQQKKEEAAEKLQHTISFLCSDIEEATKQKTLFNEITGTGLDDCTTSTFPSITVVDNEESACLGTRKRVRTIPCVDDTEGIDNNMSDDQKNDRSILSKTPRFLNNLQKLESAYFLTRCKSAYSSGKLAVQHSPIGTDERSCVNKVALKEKFREGKSPWTNPFLEGLSKYLSFSKLKVKADLKQGDLLQSSNLVCSLSFDRDAEYFATAGVNKKIKVFECNTTINEDRDIHYPVVEMVSRSTLSSTCWNTYIKSQIASSNFEGVVQLWDVTRSHVQSEMREHEQRVWSIDFSSADPTLLASGSDDGSVKLWNINQNFVGLSVSDGYIATGSETNEVFIYHKAFPMPALSFKFYSSDPLFGNEEDDSTQFITSVCWRGQSSTLLAANSTGNVKILEMT*

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