SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G15354 | AT | Annotation by Michelle Graham. TAIR10: SPA1-related 3 | chr3:5169327-5172480 REVERSE LENGTH=837 | SoyBase | E_val: 0 | ISS |
| GO:0006468 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein phosphorylation | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005834 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: heterotrimeric G-protein complex | SoyBase | N/A | ISS |
| GO:0080008 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: CUL4-RING ubiquitin ligase complex | SoyBase | N/A | ISS |
| GO:0004672 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein kinase activity | SoyBase | N/A | ISS |
| GO:0004871 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: signal transducer activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0016772 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups | SoyBase | N/A | ISS |
| GO:0042802 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: identical protein binding | SoyBase | N/A | ISS |
| KOG0265 | KOG | U5 snRNP-specific protein-like factor and related proteins | JGI | ISS | |
| PTHR22847 | Panther | WD40 REPEAT PROTEIN | JGI | ISS | |
| PTHR22847:SF121 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00069 | PFAM | Protein kinase domain | JGI | ISS | |
| PF00400 | PFAM | WD domain, G-beta repeat | JGI | ISS | |
| UniRef100_G7IRA7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: SPA1-like protein n=1 Tax=Medicago truncatula RepID=G7IRA7_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233D782 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233D782 related cluster n=1 Tax=unknown RepID=UPI000233D782 | SoyBase | E_val: 0 | ISS |
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Glyma12g25240 not represented in the dataset |
Glyma12g25240 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.12g155700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma12g25240.2 sequence type=transcript gene model=Glyma12g25240 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TTCAATGTTGCCCCCTAACAAAAGTTTCTTTTTTGACTTCTGTTGAATTGTTTTATGTTTACCAGGATGAATTTCATGCTGATTAAAGTTCATGAATTCACGTTGGTAACTTTGCAGGAAAGTTTGTCAATGCGTTCTGTGGCAACAAGCTGAGAAATTGTTCTTGAAGTTGGCCTATTGAGAATCTCTGTGGCATTTTTGGGACCACTGAAATGAGATTTTTTGAGTTATAATGGTGGAGTAGGTGCTCGAGTGTGATACATGTTGGATAATTACCGTACACTATACCTTGGCATTCATGCAACTCTTAATGGATGAAAATGAATGGTTCTTCTTCTGGGTTTTCTTGGCAGAAGATTTTCAGTTCTAGGAGCTTAAATTTTTTTGGAGGCTTTGATAGGTACTCACAAAGGCACCACAAAATTCTAGCTTCAAAAACCAAAGAGACAGGGTTATGTTGTGTTTGCTCAAGGTGACGAGCAGAAAAACCTTGGTGGTCTTTCTGGTGTATGTGAGGATAAAGTAGGGGCTAAACTTGACACCCTTTTGTTTGTGCTATAGAATGGGTGATATTAGCTTGAGGCTATGGTTGGATAAACCCGAACGATCAGTGAATGTCTCTGAATGCTTGCACATATTTAGGGAAATAGTAGAAATTGTTCATGTGGCTCATTCTCAAGGAATTGTTGTTCATAATGTGAGGCCCTCCTGCTTTGTCATGTCATCTTTCAACCATGTCTCGTTTATTGAGTCAGCAACTTGTTCCGATTCTGGCTCAGATACTTTAGAAGAAGCTGTTGAGATCAAAACTCCAACACCTACTCCTAGCTATGATATGCATCAACAGAGATGTTTAGGAAGTGAAGATTTTGTGCCTGTCAAGACTTCAACAGCTTCTTTGACAGACTCTAGTTGCATGTTGTCAAGTTTGGTGTTTGTGGCACCTGCATCATTAATAGATGATACAGAAGAAAATAAAATGAAAAACAGAAGAAAGGATGAGGAAGTTGCAGTAAAGAAGCAATCATTTTCAACAAAACAGGTACTGCAGATGGAGGCGAGTTGGTATACTAGTCCTGAAGAGTTTGCTGGTGCTTCACCTTCCTGTGCTTCAGACGTTTACCGGTTGGGAGTTCTTCTTTTTGAGCTATTTTGTCCACTCATCTCAAGAGAAGAAAAGAGCAGAACCATGTCCGGCCTAAGACATAGAGTTCTTCCTCCACAGTTACTTTTAAAATGGCCTAAAGAAGCTTCATTTTGCTTGTGGTTATTACATCCTGAGCCTAATAGTCGTCCAACAATAGGGCAGTTGTTGCAGAGTGAGTTTCTTAATGAACCAAGAGATGATATAGAAAACTGTGAGGCAGCGGTAGAAGTTAGAGAAAGGATAGATGATCAGGAGTTGTTGCAAGAATTCCTTTCATTAATTCAACAGAAAAAAGAGGAAGCTGCTGAGAAGTTACAGCATACTATCTCATTTCTGTGTTCAGATATTGAAGAAGCGACTAAGCAGAAAACTCTATTTAATGAGATAACTGGCACTGGACTAGATGATTGTACCACATCGACTTTCCCGTCCATTACAGTTGTCGATAATGAGGAATCTGCTTGTCTAGGGACCAGAAAACGGGTCAGAACTATTCCGTGTGTTGATGACACTGAAGGGATTGATAATAACATGAGTGATGATCAGAAAAATGACAGGAGTATTCTTTCAAAAACTCCACGGTTTTTGAATAATTTACAGAAACTAGAGTCAGCATACTTTTTGACACGATGCAAATCAGCCTATTCCTCAGGGAAACTTGCGGTTCAACATTCACCTATTGGTACTGATGAAAGGAGTTGTGTCAATAAAGTAGCATTAAAAGAGAAGTTCAGGGAGGGAAAAAGTCCTTGGACAAATCCTTTCCTTGAGGGTTTGAGCAAGTACCTATCTTTCAGTAAGTTAAAGGTTAAGGCTGACCTGAAACAAGGGGATCTTTTGCAGTCTTCCAACCTGGTATGCTCACTCAGTTTTGATCGCGATGCAGAATATTTTGCTACTGCAGGAGTAAACAAGAAGATTAAAGTTTTTGAATGTAACACTACCATAAATGAGGATCGTGATATCCACTATCCAGTAGTTGAGATGGTTAGCCGGTCAACATTGAGTAGTACATGTTGGAATACTTACATCAAAAGTCAAATTGCTTCAAGTAACTTTGAAGGTGTTGTACAGTTATGGGATGTGACAAGAAGTCACGTGCAGTCTGAAATGAGGGAGCATGAGCAAAGGGTATGGTCTATTGATTTCTCATCAGCGGATCCGACGTTGTTAGCAAGTGGGAGTGATGACGGTTCTGTCAAGCTATGGAATATCAATCAGAATTTCGTGGGGTTGTCTGTATCTGATGGTTACATTGCTACTGGTTCAGAGACAAACGAGGTGTTCATATACCACAAGGCTTTTCCCATGCCAGCATTATCTTTCAAATTTTACAGTAGTGACCCTCTTTTTGGGAATGAAGAGGATGATTCTACACAGTTCATCACTTCTGTTTGTTGGCGCGGTCAGTCCTCCACCTTACTTGCTGCAAATTCCACAGGAAATGTCAAAATTCTGGAGATGACTTGAGTTGGCCTTTAGTTGGGAATAAAGATACAATTCTTTGGTACACAAGGTTAAAGAATCATGTTAATGGTTAGCTTTTTGTTTCCAAAAAAAGCTATGGAGAAGTGTATACAAATTCCATGATTACTACTTGTGACAAAATTTTACATTAGATCACAGAAGAAGCAGTGAGAGAAAAAAGTGAGATTGATCTCTTCAAGAATGTTTTATAGATAAAATTCTATATTAGAAGAAAAGGAAAGTGAAAATAAATATTAGATTGTCTTATAAAATAGTGGGACAGAGGAAGAGAGCGGGGCAGAGAAAAGACAGAGAAAGTGCATAGTTTTGTCTTTGAATATTTTGTATTTAGGGAAAAAATTAAGTTGTTCCGGGCTTTCCCATAGTAACAAGAAAATAAGATTTTGTTCTTTCCTTTCTTACTTGTCTTGCCACTCTTTTTGAAAATAAGATTTTGTTCTTTCCT
>Glyma12g25240.1 sequence type=CDS gene model=Glyma12g25240 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGTGATATTAGCTTGAGGCTATGGTTGGATAAACCCGAACGATCAGTGAATGTCTCTGAATGCTTGCACATATTTAGGGAAATAGTAGAAATTGTTCATGTGGCTCATTCTCAAGGAATTGTTGTTCATAATGTGAGGCCCTCCTGCTTTGTCATGTCATCTTTCAACCATGTCTCGTTTATTGAGTCAGCAACTTGTTCCGATTCTGGCTCAGATACTTTAGAAGAAGCTGTTGAGATCAAAACTCCAACACCTACTCCTAGCTATGATATGCATCAACAGAGATGTTTAGGAAGTGAAGATTTTGTGCCTGTCAAGACTTCAACAGCTTCTTTGACAGACTCTAGTTGCATGTTGTCAAGTTTGGTGTTTGTGGCACCTGCATCATTAATAGATGATACAGAAGAAAATAAAATGAAAAACAGAAGAAAGGATGAGGAAGTTGCAGTAAAGAAGCAATCATTTTCAACAAAACAGGTACTGCAGATGGAGGCGAGTTGGTATACTAGTCCTGAAGAGTTTGCTGGTGCTTCACCTTCCTGTGCTTCAGACGTTTACCGGTTGGGAGTTCTTCTTTTTGAGCTATTTTGTCCACTCATCTCAAGAGAAGAAAAGAGCAGAACCATGTCCGGCCTAAGACATAGAGTTCTTCCTCCACAGTTACTTTTAAAATGGCCTAAAGAAGCTTCATTTTGCTTGTGGTTATTACATCCTGAGCCTAATAGTCGTCCAACAATAGGGCAGTTGTTGCAGAGTGAGTTTCTTAATGAACCAAGAGATGATATAGAAAACTGTGAGGCAGCGGTAGAAGTTAGAGAAAGGATAGATGATCAGGAGTTGTTGCAAGAATTCCTTTCATTAATTCAACAGAAAAAAGAGGAAGCTGCTGAGAAGTTACAGCATACTATCTCATTTCTGTGTTCAGATATTGAAGAAGCGACTAAGCAGAAAACTCTATTTAATGAGATAACTGGCACTGGACTAGATGATTGTACCACATCGACTTTCCCGTCCATTACAGTTGTCGATAATGAGGAATCTGCTTGTCTAGGGACCAGAAAACGGGTCAGAACTATTCCGTGTGTTGATGACACTGAAGGGATTGATAATAACATGAGTGATGATCAGAAAAATGACAGGAGTATTCTTTCAAAAACTCCACGGTTTTTGAATAATTTACAGAAACTAGAGTCAGCATACTTTTTGACACGATGCAAATCAGCCTATTCCTCAGGGAAACTTGCGGTTCAACATTCACCTATTGGTACTGATGAAAGGAGTTGTGTCAATAAAGTAGCATTAAAAGAGAAGTTCAGGGAGGGAAAAAGTCCTTGGACAAATCCTTTCCTTGAGGGTTTGAGCAAGTACCTATCTTTCAGTAAGTTAAAGGTTAAGGCTGACCTGAAACAAGGGGATCTTTTGCAGTCTTCCAACCTGGTATGCTCACTCAGTTTTGATCGCGATGCAGAATATTTTGCTACTGCAGGAGTAAACAAGAAGATTAAAGTTTTTGAATGTAACACTACCATAAATGAGGATCGTGATATCCACTATCCAGTAGTTGAGATGGTTAGCCGGTCAACATTGAGTAGTACATGTTGGAATACTTACATCAAAAGTCAAATTGCTTCAAGTAACTTTGAAGGTGTTGTACAGTTATGGGATGTGACAAGAAGTCACGTGCAGTCTGAAATGAGGGAGCATGAGCAAAGGGTATGGTCTATTGATTTCTCATCAGCGGATCCGACGTTGTTAGCAAGTGGGAGTGATGACGGTTCTGTCAAGCTATGGAATATCAATCAGGGAATTAGTGTTGGTACCATCAAAACAAAGGCAAATGTGTGTTGTGTTCAGTTTCCCCTTGAATTTGCTCATTCCCTTGCATTTGGTTCGGCAGATCATCGGATATATTACTATGATCTTCGCAACCTGAAAGTGCCTCTTTGTACATTGGTTGGACACGATAAGACAGTGAGCTACATCAAGTTTGTAGACACCATGAGCCTAGTCTCTGCATCCACAGATAACACTTTGAAGCTTTGGGATTTGTCCTTGTGTGCTTCTCGAGTTATAGACTCACCAATTCAATCATTCACTGGTCATATGAATGTTAAGAATTTCGTGGGGTTGTCTGTATCTGATGGTTACATTGCTACTGGTTCAGAGACAAACGAGGTGTTCATATACCACAAGGCTTTTCCCATGCCAGCATTATCTTTCAAATTTTACAGTAGTGACCCTCTTTTTGGGAATGAAGAGGATGATTCTACACAGTTCATCACTTCTGTTTGTTGGCGCGGTCAGTCCTCCACCTTACTTGCTGCAAATTCCACAGGAAATGTCAAAATTCTGGAGATGACTTGA >Glyma12g25240.2 sequence type=CDS gene model=Glyma12g25240 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGTGATATTAGCTTGAGGCTATGGTTGGATAAACCCGAACGATCAGTGAATGTCTCTGAATGCTTGCACATATTTAGGGAAATAGTAGAAATTGTTCATGTGGCTCATTCTCAAGGAATTGTTGTTCATAATGTGAGGCCCTCCTGCTTTGTCATGTCATCTTTCAACCATGTCTCGTTTATTGAGTCAGCAACTTGTTCCGATTCTGGCTCAGATACTTTAGAAGAAGCTGTTGAGATCAAAACTCCAACACCTACTCCTAGCTATGATATGCATCAACAGAGATGTTTAGGAAGTGAAGATTTTGTGCCTGTCAAGACTTCAACAGCTTCTTTGACAGACTCTAGTTGCATGTTGTCAAGTTTGGTGTTTGTGGCACCTGCATCATTAATAGATGATACAGAAGAAAATAAAATGAAAAACAGAAGAAAGGATGAGGAAGTTGCAGTAAAGAAGCAATCATTTTCAACAAAACAGGTACTGCAGATGGAGGCGAGTTGGTATACTAGTCCTGAAGAGTTTGCTGGTGCTTCACCTTCCTGTGCTTCAGACGTTTACCGGTTGGGAGTTCTTCTTTTTGAGCTATTTTGTCCACTCATCTCAAGAGAAGAAAAGAGCAGAACCATGTCCGGCCTAAGACATAGAGTTCTTCCTCCACAGTTACTTTTAAAATGGCCTAAAGAAGCTTCATTTTGCTTGTGGTTATTACATCCTGAGCCTAATAGTCGTCCAACAATAGGGCAGTTGTTGCAGAGTGAGTTTCTTAATGAACCAAGAGATGATATAGAAAACTGTGAGGCAGCGGTAGAAGTTAGAGAAAGGATAGATGATCAGGAGTTGTTGCAAGAATTCCTTTCATTAATTCAACAGAAAAAAGAGGAAGCTGCTGAGAAGTTACAGCATACTATCTCATTTCTGTGTTCAGATATTGAAGAAGCGACTAAGCAGAAAACTCTATTTAATGAGATAACTGGCACTGGACTAGATGATTGTACCACATCGACTTTCCCGTCCATTACAGTTGTCGATAATGAGGAATCTGCTTGTCTAGGGACCAGAAAACGGGTCAGAACTATTCCGTGTGTTGATGACACTGAAGGGATTGATAATAACATGAGTGATGATCAGAAAAATGACAGGAGTATTCTTTCAAAAACTCCACGGTTTTTGAATAATTTACAGAAACTAGAGTCAGCATACTTTTTGACACGATGCAAATCAGCCTATTCCTCAGGGAAACTTGCGGTTCAACATTCACCTATTGGTACTGATGAAAGGAGTTGTGTCAATAAAGTAGCATTAAAAGAGAAGTTCAGGGAGGGAAAAAGTCCTTGGACAAATCCTTTCCTTGAGGGTTTGAGCAAGTACCTATCTTTCAGTAAGTTAAAGGTTAAGGCTGACCTGAAACAAGGGGATCTTTTGCAGTCTTCCAACCTGGTATGCTCACTCAGTTTTGATCGCGATGCAGAATATTTTGCTACTGCAGGAGTAAACAAGAAGATTAAAGTTTTTGAATGTAACACTACCATAAATGAGGATCGTGATATCCACTATCCAGTAGTTGAGATGGTTAGCCGGTCAACATTGAGTAGTACATGTTGGAATACTTACATCAAAAGTCAAATTGCTTCAAGTAACTTTGAAGGTGTTGTACAGTTATGGGATGTGACAAGAAGTCACGTGCAGTCTGAAATGAGGGAGCATGAGCAAAGGGTATGGTCTATTGATTTCTCATCAGCGGATCCGACGTTGTTAGCAAGTGGGAGTGATGACGGTTCTGTCAAGCTATGGAATATCAATCAGAATTTCGTGGGGTTGTCTGTATCTGATGGTTACATTGCTACTGGTTCAGAGACAAACGAGGTGTTCATATACCACAAGGCTTTTCCCATGCCAGCATTATCTTTCAAATTTTACAGTAGTGACCCTCTTTTTGGGAATGAAGAGGATGATTCTACACAGTTCATCACTTCTGTTTGTTGGCGCGGTCAGTCCTCCACCTTACTTGCTGCAAATTCCACAGGAAATGTCAAAATTCTGGAGATGACTTGA
>Glyma12g25240.1 sequence type=predicted peptide gene model=Glyma12g25240 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGDISLRLWLDKPERSVNVSECLHIFREIVEIVHVAHSQGIVVHNVRPSCFVMSSFNHVSFIESATCSDSGSDTLEEAVEIKTPTPTPSYDMHQQRCLGSEDFVPVKTSTASLTDSSCMLSSLVFVAPASLIDDTEENKMKNRRKDEEVAVKKQSFSTKQVLQMEASWYTSPEEFAGASPSCASDVYRLGVLLFELFCPLISREEKSRTMSGLRHRVLPPQLLLKWPKEASFCLWLLHPEPNSRPTIGQLLQSEFLNEPRDDIENCEAAVEVRERIDDQELLQEFLSLIQQKKEEAAEKLQHTISFLCSDIEEATKQKTLFNEITGTGLDDCTTSTFPSITVVDNEESACLGTRKRVRTIPCVDDTEGIDNNMSDDQKNDRSILSKTPRFLNNLQKLESAYFLTRCKSAYSSGKLAVQHSPIGTDERSCVNKVALKEKFREGKSPWTNPFLEGLSKYLSFSKLKVKADLKQGDLLQSSNLVCSLSFDRDAEYFATAGVNKKIKVFECNTTINEDRDIHYPVVEMVSRSTLSSTCWNTYIKSQIASSNFEGVVQLWDVTRSHVQSEMREHEQRVWSIDFSSADPTLLASGSDDGSVKLWNINQGISVGTIKTKANVCCVQFPLEFAHSLAFGSADHRIYYYDLRNLKVPLCTLVGHDKTVSYIKFVDTMSLVSASTDNTLKLWDLSLCASRVIDSPIQSFTGHMNVKNFVGLSVSDGYIATGSETNEVFIYHKAFPMPALSFKFYSSDPLFGNEEDDSTQFITSVCWRGQSSTLLAANSTGNVKILEMT* >Glyma12g25240.2 sequence type=predicted peptide gene model=Glyma12g25240 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGDISLRLWLDKPERSVNVSECLHIFREIVEIVHVAHSQGIVVHNVRPSCFVMSSFNHVSFIESATCSDSGSDTLEEAVEIKTPTPTPSYDMHQQRCLGSEDFVPVKTSTASLTDSSCMLSSLVFVAPASLIDDTEENKMKNRRKDEEVAVKKQSFSTKQVLQMEASWYTSPEEFAGASPSCASDVYRLGVLLFELFCPLISREEKSRTMSGLRHRVLPPQLLLKWPKEASFCLWLLHPEPNSRPTIGQLLQSEFLNEPRDDIENCEAAVEVRERIDDQELLQEFLSLIQQKKEEAAEKLQHTISFLCSDIEEATKQKTLFNEITGTGLDDCTTSTFPSITVVDNEESACLGTRKRVRTIPCVDDTEGIDNNMSDDQKNDRSILSKTPRFLNNLQKLESAYFLTRCKSAYSSGKLAVQHSPIGTDERSCVNKVALKEKFREGKSPWTNPFLEGLSKYLSFSKLKVKADLKQGDLLQSSNLVCSLSFDRDAEYFATAGVNKKIKVFECNTTINEDRDIHYPVVEMVSRSTLSSTCWNTYIKSQIASSNFEGVVQLWDVTRSHVQSEMREHEQRVWSIDFSSADPTLLASGSDDGSVKLWNINQNFVGLSVSDGYIATGSETNEVFIYHKAFPMPALSFKFYSSDPLFGNEEDDSTQFITSVCWRGQSSTLLAANSTGNVKILEMT*
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