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Report for Sequence Feature Glyma12g24941

Feature Type:gene_model
Chromosome:Gm12
Start:27870256
stop:27870890
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma12g24941
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G38920AT Annotation by Michelle Graham. TAIR10: SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-related | chr2:16248420-16250585 REVERSE LENGTH=335 SoyBaseE_val: 6.00E-64ISS
GO:0006817GO-bp Annotation by Michelle Graham. GO Biological Process: phosphate ion transport SoyBaseN/AISS
GO:0009062GO-bp Annotation by Michelle Graham. GO Biological Process: fatty acid catabolic process SoyBaseN/AISS
GO:0016036GO-bp Annotation by Michelle Graham. GO Biological Process: cellular response to phosphate starvation SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
PTHR23041Panther RING FINGER PROTEIN 4 JGI ISS
PTHR23041:SF6Panther PUTATIVE RING FINGER PROTEIN JGI ISS
UniRef100_B9SDP3UniRef Annotation by Michelle Graham. Most informative UniRef hit: Ubiquitin-protein ligase, putative n=1 Tax=Ricinus communis RepID=B9SDP3_RICCO SoyBaseE_val: 2.00E-67ISS
UniRef100_UPI000233D780UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233D780 related cluster n=1 Tax=unknown RepID=UPI000233D780 SoyBaseE_val: 2.00E-100ISS

Expression Patterns of Glyma12g24941
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma12g24941 not represented in the dataset
Glyma12g24941 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma12g24941 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.12g154800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma12g24941
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma12g24941
>Glyma12g24941.1   sequence type=CDS   gene model=Glyma12g24941   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATGCTATTGCAATGAGGGAAATACTTCAGAAATATGATAAAGTACACAGCTCTTTGAATGGAAAGAATTTCAAGTCTAGGATGAATGCCGAACACATTGACCTTTTGCACTCACCTTGGCTAATTGAATTGGGAGCTTTTTATCTGAATTCTAGCGGACTAGATAATTGTGAGCTTGATGGAGTCTACGGTTTCTTTTCATGTGATCTAAGCATAACTAAAGCTGTAATGACGTTGGTTCTTCCCGATTCTATTAATCTCGAGTATGATTTAACTTGTGCAATTTGTCTGGATTTTGTTTTCAACCCATATGCTTTGAGTTGTGGTCCTATCTTCTGCAAGTCGTGTGCTTGCTCAGCTGCCTCTGTGATGATTTTTCAAGGCCTTAAATCTGCAAGTCCCGAGTCAAAGTGTCCTATATGCAAAGAG
Predicted protein sequences of Glyma12g24941
>Glyma12g24941.1   sequence type=predicted peptide   gene model=Glyma12g24941   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNAIAMREILQKYDKVHSSLNGKNFKSRMNAEHIDLLHSPWLIELGAFYLNSSGLDNCELDGVYGFFSCDLSITKAVMTLVLPDSINLEYDLTCAICLDFVFNPYALSCGPIFCKSCACSAASVMIFQGLKSASPESKCPICKE






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