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Report for Sequence Feature Glyma12g24910

Feature Type:gene_model
Chromosome:Gm12
Start:27742715
stop:27744699
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma12g24910
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G53035AT Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G15358.1); Has 49 Blast hits to 49 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:19761866-19762318 REVERSE LENGTH=150 SoyBaseE_val: 5.00E-66ISS
GO:0007623GO-bp Annotation by Michelle Graham. GO Biological Process: circadian rhythm SoyBaseN/AISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_I1LT51UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1LT51_SOYBN SoyBaseE_val: 5.00E-100ISS

Expression Patterns of Glyma12g24910
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma12g24910 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.12g154500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma12g24910
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma12g24910
>Glyma12g24910.1   sequence type=CDS   gene model=Glyma12g24910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTTCTTCTGTATATACCCTTATGTGTGTTCTTCATTCCACAATAGCTCTTACTTGTGGAGCTTTGATGATATTCTACTCCAAAGAGATCTCTGTGCTTGGCCACGGATCGGAGACCGCGAGCAAGCTTCAAGGGACAACACCCCATGATCAGCTTCTGATTGACACCTCTGATTCCTTCTCTGGCTTGTTGTTGTTCACAATAGGATTCCTTCTCTTGATGGTTGCTTTTGTTAAGGACAGAGACTTTCAGAGTTTCTTTGCCAAAGGGTGTGTGATGCTTCACATTTCCATGGCAGTATGGAGATTCTTCTTTGAGAGGAAGCTTGGGGATCTTGCACATGAGTGGCCTAGGCATGCTGTTGGGGACATTGCATTGGCCTTTTCATGGGTCTTTTTTCTTGTGTACACATGGAGAGAGAAATATGATTAG
Predicted protein sequences of Glyma12g24910
>Glyma12g24910.1   sequence type=predicted peptide   gene model=Glyma12g24910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVSSVYTLMCVLHSTIALTCGALMIFYSKEISVLGHGSETASKLQGTTPHDQLLIDTSDSFSGLLLFTIGFLLLMVAFVKDRDFQSFFAKGCVMLHISMAVWRFFFERKLGDLAHEWPRHAVGDIALAFSWVFFLVYTWREKYD*






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