|
A newer version of this gene model can be found here:
Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
---|---|---|---|---|---|
AT3G15353 | AT | Annotation by Michelle Graham. TAIR10: metallothionein 3 | chr3:5180825-5181325 REVERSE LENGTH=69 | SoyBase | E_val: 5.00E-15 | ISS |
GO:0006612 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane | SoyBase | N/A | ISS |
GO:0006833 | GO-bp | Annotation by Michelle Graham. GO Biological Process: water transport | SoyBase | N/A | ISS |
GO:0006878 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular copper ion homeostasis | SoyBase | N/A | ISS |
GO:0006970 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to osmotic stress | SoyBase | N/A | ISS |
GO:0007389 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pattern specification process | SoyBase | N/A | ISS |
GO:0008361 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of cell size | SoyBase | N/A | ISS |
GO:0009651 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salt stress | SoyBase | N/A | ISS |
GO:0009750 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to fructose stimulus | SoyBase | N/A | ISS |
GO:0009926 | GO-bp | Annotation by Michelle Graham. GO Biological Process: auxin polar transport | SoyBase | N/A | ISS |
GO:0009963 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of flavonoid biosynthetic process | SoyBase | N/A | ISS |
GO:0010015 | GO-bp | Annotation by Michelle Graham. GO Biological Process: root morphogenesis | SoyBase | N/A | ISS |
GO:0010363 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response | SoyBase | N/A | ISS |
GO:0040007 | GO-bp | Annotation by Michelle Graham. GO Biological Process: growth | SoyBase | N/A | ISS |
GO:0046686 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cadmium ion | SoyBase | N/A | ISS |
GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
GO:0005507 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: copper ion binding | SoyBase | N/A | ISS |
UniRef100_I1LT49 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LT49_SOYBN | SoyBase | E_val: 7.00E-37 | ISS |
UniRef100_Q84RC4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Metallothionein-like protein n=1 Tax=Arachis hypogaea RepID=Q84RC4_ARAHY | SoyBase | E_val: 1.00E-26 | ISS |
Glyma12g24840 not represented in the dataset |
Glyma12g24840 not represented in the dataset |
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Corresponding Name | Annotation Version | Evidence | Comments |
---|---|---|---|
Glyma.12g154300 | Wm82.a2.v1 | IGC | As supplied by JGI |
Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma12g24840.1 sequence type=CDS gene model=Glyma12g24840 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCGAACACATGCGGCAACTGTGACTGCGCTGACAAGACTAACTGCACCAAGGGAAACAGCTATGGTGTTATAGTAGAGACTGAGAAGAGCTACATCGAGACTGTTGACATGGATGTTCCAGCAGCTGAGCATGATGGGAAGTGCAAGTGTGGCACTAACTGCACTTGCACGGACTGCACTTGTGGCCATTAA
>Glyma12g24840.1 sequence type=predicted peptide gene model=Glyma12g24840 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSNTCGNCDCADKTNCTKGNSYGVIVETEKSYIETVDMDVPAAEHDGKCKCGTNCTCTDCTCGH*
Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||