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Report for Sequence Feature Glyma12g24604

Feature Type:gene_model
Chromosome:Gm12
Start:27231344
stop:27233815
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma12g24604
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G15355AT Annotation by Michelle Graham. TAIR10: ubiquitin-conjugating enzyme 25 | chr3:5183858-5186669 FORWARD LENGTH=609 SoyBaseE_val: 1.00E-115ISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0016881GO-mf Annotation by Michelle Graham. GO Molecular Function: acid-amino acid ligase activity SoyBaseN/AISS
KOG0417 KOG Ubiquitin-protein ligase JGI ISS
PTHR24067Panther UBIQUITIN-CONJUGATING ENZYME E2 JGI ISS
PTHR24067:SF12Panther SUBFAMILY NOT NAMED JGI ISS
PF00179PFAM Ubiquitin-conjugating enzyme JGI ISS
UniRef100_B9T0E4UniRef Annotation by Michelle Graham. Most informative UniRef hit: Ubiquitin conjugating enzyme, putative n=1 Tax=Ricinus communis RepID=B9T0E4_RICCO SoyBaseE_val: 4.00E-137ISS
UniRef100_UPI000233D77AUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233D77A related cluster n=1 Tax=unknown RepID=UPI000233D77A SoyBaseE_val: 0ISS

Expression Patterns of Glyma12g24604
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma12g24604 not represented in the dataset
Glyma12g24604 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma12g24604 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma12g24604
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma12g24604
>Glyma12g24604.1   sequence type=CDS   gene model=Glyma12g24604   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACAATTTACAATCCATATCATTCAAATTTTGTTGGACCTGCATATCATCATCCAGGATCTAAATCTATTAATCAGATGTGGTCGACGAATGCTTATAATTTGCAGGCATTCCCTAATTATAATTATTATTATCCATATGATTATAATTATACAGCTCCCTTTGCTCATCATTTTCATGTCCCACCTGGGCCATTGATTCATAACTCTTGGGTTTATAATTCTGTGGGAGATGGAAATAATGAGGCAACTGCCAATAATACTATTGCTACAATATCTGATGAAGCTAGAGGGGAAATTTTGAGGAAATTTCGAAGCTTTAAACAATTTGACGTTATTGAAGACGTTTCAGACCATCACTTTGTTCATGCCAACTCTTCCATGGAACAGCATTGGGCTAAAAGAATCCAGGGAGAGTGGAAGTCATTGGAGAAGGATTTACCAGATTCAATATTTGTCAGAGTTTATGAATCGAGAATAGATCTTCTAAGGGCCGTGATTATTGGAGCAGAGGGAACACCTTATCATGATGGCCTTTTCTTTTTTGATGTTTTCTTCCCGAGTGGCTATTCGCATGTACCTCCACAAGTTCACTACCATTCTGGCGGGCTTAGGCTCAACCCAAATTTATATAGTAGTGGAAAAGTTTGTCTTAGTCTTCTTAACACCTGGACCGGCCATCAAAATGAGCAGTGGATTCCAGGTGTTTCAACAATTTTACAGGTTCTGGTCTTTATACAGGGTCTAATCTTGGTTGCGAAGCCTTTCTTTAATGAGCCTGGATATGCACATTTAAGCAATTCACAATATGGTGAAATTAGTTCTTTGAAGTACAATGAGGACACATTCATCCTATCATTGAGGACAATGATATACATAATGAGAAGGCCTCCAAAGAATTTCAAGGACTTTGTTGCTGGGAACTTTTGCAGCCGAGCTCATGATATTCTGGTGGCATGCAAGGCATACATTGATGGTGCTCAAGTTGGTTGTGTGGTCAAAGGTGGGGCACAAGATGTTGATCAAGGTGGCAGTAGCAGCTCAGTCCAGTTTAGGACATCTTTAGCTGCATTTGTGAATATGCTTGTTAATGAGTTTACACAAGTTGGAGCTAAGGATTGTGACAAAGTCTTTCCATTAACTGCTGTGGGAAATTCGTCCAATGAAATGCTAAAAACAGTGGGAAATCCATCCGGTGTAAAGCTGACAGCAGTGGGAAATATGTCAGGTGAAATGGTGGCAGCAGTGGGAAATGCGTCCGATGAAATGCTTGTTGCTGCTGCAGCAATTCCTTGA
Predicted protein sequences of Glyma12g24604
>Glyma12g24604.1   sequence type=predicted peptide   gene model=Glyma12g24604   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTIYNPYHSNFVGPAYHHPGSKSINQMWSTNAYNLQAFPNYNYYYPYDYNYTAPFAHHFHVPPGPLIHNSWVYNSVGDGNNEATANNTIATISDEARGEILRKFRSFKQFDVIEDVSDHHFVHANSSMEQHWAKRIQGEWKSLEKDLPDSIFVRVYESRIDLLRAVIIGAEGTPYHDGLFFFDVFFPSGYSHVPPQVHYHSGGLRLNPNLYSSGKVCLSLLNTWTGHQNEQWIPGVSTILQVLVFIQGLILVAKPFFNEPGYAHLSNSQYGEISSLKYNEDTFILSLRTMIYIMRRPPKNFKDFVAGNFCSRAHDILVACKAYIDGAQVGCVVKGGAQDVDQGGSSSSVQFRTSLAAFVNMLVNEFTQVGAKDCDKVFPLTAVGNSSNEMLKTVGNPSGVKLTAVGNMSGEMVAAVGNASDEMLVAAAAIP*






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