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Report for Sequence Feature Glyma12g24221

Feature Type:gene_model
Chromosome:Gm12
Start:26976853
stop:26978971
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma12g24221
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G53850AT Annotation by Michelle Graham. TAIR10: haloacid dehalogenase-like hydrolase family protein | chr5:21861617-21864817 REVERSE LENGTH=402 SoyBaseE_val: 2.00E-78ISS
GO:0008152GO-bp Annotation by Michelle Graham. GO Biological Process: metabolic process SoyBaseN/AISS
GO:0019509GO-bp Annotation by Michelle Graham. GO Biological Process: L-methionine salvage from methylthioadenosine SoyBaseN/AISS
GO:0071267GO-bp Annotation by Michelle Graham. GO Biological Process: L-methionine salvage SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009570GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
GO:0008967GO-mf Annotation by Michelle Graham. GO Molecular Function: phosphoglycolate phosphatase activity SoyBaseN/AISS
GO:0016787GO-mf Annotation by Michelle Graham. GO Molecular Function: hydrolase activity SoyBaseN/AISS
GO:0043167GO-mf Annotation by Michelle Graham. GO Molecular Function: ion binding SoyBaseN/AISS
GO:0043874GO-mf Annotation by Michelle Graham. GO Molecular Function: acireductone synthase activity SoyBaseN/AISS
GO:0046872GO-mf Annotation by Michelle Graham. GO Molecular Function: metal ion binding SoyBaseN/AISS
PTHR10640Panther PENTULOSE-5-PHOSPHATE-4-EPIMERASE-RELATED JGI ISS
PTHR10640:SF2Panther PENTULOSE-5-PHOSPHATE-4-EPIMERASE-RELATED JGI ISS
PF00596PFAM Class II Aldolase and Adducin N-terminal domain JGI ISS
UniRef100_B9N1F9UniRef Annotation by Michelle Graham. Most informative UniRef hit: Probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 n=1 Tax=Populus trichocarpa RepID=MTBC_POPTR SoyBaseE_val: 2.00E-88ISS
UniRef100_UPI000233D776UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233D776 related cluster n=1 Tax=unknown RepID=UPI000233D776 SoyBaseE_val: 2.00E-128ISS

Expression Patterns of Glyma12g24221
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma12g24221 not represented in the dataset
Glyma12g24221 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma12g24221 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.12g153200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma12g24221
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma12g24221
>Glyma12g24221.2   sequence type=transcript   gene model=Glyma12g24221   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCTGAGAGCAAATTGTGAGTGTTGCACATTGATTTTTTTCTTCTTGGGAGTAGTCATTGCCCATCAGCTTTAATATAGGTATCATGAATATGGAAATAAAGAAATTTTAAATGGTTCCTTCCCACCTCCTGTTGTATTACTCACATGGAAATGATAAAAGGAATCAAGGGGCATGGTTATTATGATGAACTTGTGGTCCCCATAATAGAGAACACAGCCTACGAATATGAGCTCACAGAAGCTCTAGCTAAAGCTATTGAAGCCTACACTAAAACTACAGCAGTTCTTGTACGTAACCATGGAATATATGTTTGGGGAGACTCGTGGATCAGTGCTAAAACTCTGGCTGAGTGTTATCATTACCTCTTTGATGCTACTATCAAACTTCACCAATTAGGATTGGACTGGTCTACTCCAAATCATGGTCCAATACAAAGTATTAGGAGTCTAATGATTGCTGGGGAGTCAAATGCATCCGATAAGACAAGGAAGGCTAATGGTGAAATTGATCCATTTCCATGTTGCATTGTCCTTGACATTGAAGGAAATACTACTCCCATATCATTTGTTACTGAGGTTCTCTTCCCATATGCATGTCAAAATGTTGGGAGGCATCTATCCATGACATATGATACTCCTGAAACTGAATCTGATATTAAGTTGCTTTGCTCACAAGTAAGATTCTAATAGAGTTGTATTCATGATTATGCAATTTATACGTATGGAATGGGAACCTGTGCTGTGAGTTAGACTATGAGCTTAATACAGTACACTGGATGGTTATGCTTTATT

>Glyma12g24221.3   sequence type=transcript   gene model=Glyma12g24221   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAAGAGATAGTTAGGTATAGGAACATAGGGAGCTTGTGTGTTTATCCTGTAAAGTAAGGGGTGGGGGTAACAAGGAAAATGGAAGAGCTCTTAGAATGGAAAACATAATTTTGAAATTACTCACATGGAAATGATAAAAGGAATCAAGGGGCATGGTTATTATGATGAACTTGTGGTCCCCATAATAGAGAACACAGCCTACGAATATGAGCTCACAGAAGCTCTAGCTAAAGCTATTGAAGCCTACACTAAAACTACAGCAGTTCTTGTACGTAACCATGGAATATATGTTTGGGGAGACTCGTGGATCAGTGCTAAAACTCTGGCTGAGTGTTATCATTACCTCTTTGATGCTACTATCAAACTTCACCAATTAGGATTGGACTGGTCTACTCCAAATCATGGTCCAATACAAAGTATTAGGAGTCTAATGATTGCTGGGGAGTCAAATGCATCCGATAAGACAAGGAAGGCTAATGGTGAAATTGATCCATTTCCATGTTGCATTGTCCTTGACATTGAAGGAAATACTACTCCCATATCATTTGTTACTGAGGTTCTCTTCCCATATGCATGTCAAAATGTTGGGAGGCATCTATCCATGACATATGATACTCCTGAAACTGAATCTGATATTAAGTTGCTTTGCTCACAAGTAAGATTCTAATAGAGTTGTATTCATGATTATGCAATTTATACGTATGGAATGGGAACCTGTGCTGTGAGTTAGACTATGAGCTTAATACAGTACACTGGATGGTTATGCTTTATT
Coding sequences of Glyma12g24221
>Glyma12g24221.1   sequence type=CDS   gene model=Glyma12g24221   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAATGATAAAAGGAATCAAGGGGCATGGTTATTATGATGAACTTGTGGTCCCCATAATAGAGAACACAGCCTACGAATATGAGCTCACAGAAGCTCTAGCTAAAGCTATTGAAGCCTACACTAAAACTACAGCAGTTCTTGTACGTAACCATGGAATATATGTTTGGGGAGACTCGTGGATCAGTGCTAAAACTCTGGCTGAGTGTTATCATTACCTCTTTGATGCTACTATCAAACTTCACCAATTAGGATTGGACTGGTCTACTCCAAATCATGGTCCAATACAAAGTATTAGGAGTCTAATGATTGCTGGGGAGTCAAATGCATCCGATAAGACAAGGAAGGCTAATGGTGAAATTGATCCATTTCCATGTTGCATTGTCCTTGACATTGAAGGAAATACTACTCCCATATCATTTGTTACTGAGGTTCTCTTCCCATATGCATGTCAAAATGTTGGGAGGCATCTATCCATGACATATGATACTCCTGAAACTGAATCTGATATTAAGTTGCTTTGCTCACAAGTAAGATTCTAA

>Glyma12g24221.2   sequence type=CDS   gene model=Glyma12g24221   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAATGATAAAAGGAATCAAGGGGCATGGTTATTATGATGAACTTGTGGTCCCCATAATAGAGAACACAGCCTACGAATATGAGCTCACAGAAGCTCTAGCTAAAGCTATTGAAGCCTACACTAAAACTACAGCAGTTCTTGTACGTAACCATGGAATATATGTTTGGGGAGACTCGTGGATCAGTGCTAAAACTCTGGCTGAGTGTTATCATTACCTCTTTGATGCTACTATCAAACTTCACCAATTAGGATTGGACTGGTCTACTCCAAATCATGGTCCAATACAAAGTATTAGGAGTCTAATGATTGCTGGGGAGTCAAATGCATCCGATAAGACAAGGAAGGCTAATGGTGAAATTGATCCATTTCCATGTTGCATTGTCCTTGACATTGAAGGAAATACTACTCCCATATCATTTGTTACTGAGGTTCTCTTCCCATATGCATGTCAAAATGTTGGGAGGCATCTATCCATGACATATGATACTCCTGAAACTGAATCTGATATTAAGTTGCTTTGCTCACAAGTAAGATTCTAA

>Glyma12g24221.3   sequence type=CDS   gene model=Glyma12g24221   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAATGATAAAAGGAATCAAGGGGCATGGTTATTATGATGAACTTGTGGTCCCCATAATAGAGAACACAGCCTACGAATATGAGCTCACAGAAGCTCTAGCTAAAGCTATTGAAGCCTACACTAAAACTACAGCAGTTCTTGTACGTAACCATGGAATATATGTTTGGGGAGACTCGTGGATCAGTGCTAAAACTCTGGCTGAGTGTTATCATTACCTCTTTGATGCTACTATCAAACTTCACCAATTAGGATTGGACTGGTCTACTCCAAATCATGGTCCAATACAAAGTATTAGGAGTCTAATGATTGCTGGGGAGTCAAATGCATCCGATAAGACAAGGAAGGCTAATGGTGAAATTGATCCATTTCCATGTTGCATTGTCCTTGACATTGAAGGAAATACTACTCCCATATCATTTGTTACTGAGGTTCTCTTCCCATATGCATGTCAAAATGTTGGGAGGCATCTATCCATGACATATGATACTCCTGAAACTGAATCTGATATTAAGTTGCTTTGCTCACAAGTAAGATTCTAA
Predicted protein sequences of Glyma12g24221
>Glyma12g24221.1   sequence type=predicted peptide   gene model=Glyma12g24221   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEMIKGIKGHGYYDELVVPIIENTAYEYELTEALAKAIEAYTKTTAVLVRNHGIYVWGDSWISAKTLAECYHYLFDATIKLHQLGLDWSTPNHGPIQSIRSLMIAGESNASDKTRKANGEIDPFPCCIVLDIEGNTTPISFVTEVLFPYACQNVGRHLSMTYDTPETESDIKLLCSQVRF*

>Glyma12g24221.2   sequence type=predicted peptide   gene model=Glyma12g24221   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEMIKGIKGHGYYDELVVPIIENTAYEYELTEALAKAIEAYTKTTAVLVRNHGIYVWGDSWISAKTLAECYHYLFDATIKLHQLGLDWSTPNHGPIQSIRSLMIAGESNASDKTRKANGEIDPFPCCIVLDIEGNTTPISFVTEVLFPYACQNVGRHLSMTYDTPETESDIKLLCSQVRF*

>Glyma12g24221.3   sequence type=predicted peptide   gene model=Glyma12g24221   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEMIKGIKGHGYYDELVVPIIENTAYEYELTEALAKAIEAYTKTTAVLVRNHGIYVWGDSWISAKTLAECYHYLFDATIKLHQLGLDWSTPNHGPIQSIRSLMIAGESNASDKTRKANGEIDPFPCCIVLDIEGNTTPISFVTEVLFPYACQNVGRHLSMTYDTPETESDIKLLCSQVRF*






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