Glyma12g24190 - SoyBase

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Report for Sequence Feature Glyma12g24190

Feature Type:	gene_model
Chromosome:	Gm12
Start:	26922835
stop:	26923995
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g24190

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G01140	AT	Annotation by Michelle Graham. TAIR10: Aldolase superfamily protein \| chr2:95006-96491 REVERSE LENGTH=391	SoyBase	E_val: 0	ISS
GO:0006007	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucose catabolic process	SoyBase	N/A	ISS
GO:0006096	GO-bp	Annotation by Michelle Graham. GO Biological Process: glycolysis	SoyBase	N/A	ISS
GO:0006098	GO-bp	Annotation by Michelle Graham. GO Biological Process: pentose-phosphate shunt	SoyBase	N/A	ISS
GO:0006979	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to oxidative stress	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0046686	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cadmium ion	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009534	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid	SoyBase	N/A	ISS
GO:0009536	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastid	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0010287	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastoglobule	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004332	GO-mf	Annotation by Michelle Graham. GO Molecular Function: fructose-bisphosphate aldolase activity	SoyBase	N/A	ISS
KOG1557	KOG	Fructose-biphosphate aldolase	JGI		ISS
PTHR11627	Panther	FRUCTOSE-BISPHOSPHATE ALDOLASE	JGI		ISS
PF00274	PFAM	Fructose-bisphosphate aldolase class-I	JGI		ISS
UniRef100_I1LT45	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Fructose-bisphosphate aldolase n=1 Tax=Glycine max RepID=I1LT45_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1LT45	UniRef	Annotation by Michelle Graham. Best UniRef hit: Fructose-bisphosphate aldolase n=1 Tax=Glycine max RepID=I1LT45_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma12g24190

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma12g24190 not represented in the dataset	Glyma12g24190 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma12g24190 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g153000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g24190

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma12g24190

Limit To All Plant Sequences

>Glyma12g24190.1   sequence type=CDS   gene model=Glyma12g24190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGTCTGCAAAGCTCAACACCTTGTCTTCCCAGTGGATCGCCCACAATTCCTTCTCTCCTCGCCGTGGATCCTCTTCTCGCCGAGTCTCTCTTCCGATCCGCGCTTCTTCTTACCAACACGAACTCGTCCAAACCGCCAAATCTATTGCATCTCCCAGTCGTGGAATTCTTGCAATTGATGAATCAAATGCCACATGTGGGAAGCGTTTAGCATCCATTGGATTGGACAATACTGAGGTGAATCGCCAGGCCTATAGGCAACTTCTGCTCACCACACCTGGCCTTGGTGAATACATCTCTGGTGCAATTCTTTTTGAAGAAACCCTTTACCAGTCGACAACAGATGGAAATAAATTTGTGGATTGCCTCCGCGATCAGAACATTGTGCCCGACATCAAAGTTGATAAGGGTCTGGTCCCTCTGCCAGGGTCAAACAATGAGTCTTGGTCTGCTGAATACTACAAGCAAGGTGCTCGATTTGCCAAGTGGAGGACAGTTGTTAGCATTCCATGTGGTCCTTCTGCATTAGCTGTCAAGGAAGCAGCGTGGGGGCTTGCACGTTATGCTGCTATCTCTCAGGACAATGGTCTTGTGCCAATCGTAGAGCCTGAAATTCTTCTTGATGGAGATCACCCAATTGAGAGGACACTGGAAGTGGCCGAGAAGGTCTGGTCAGAAGTCTTCTTCTATTTGGCTGAAAACAATGTCCTTTTTGAGGGAATTTTGCTCAAACCCAGCATGGTTACACCTGGGGCTGAACACACGGAAAAGGCTTCTCCGGAAACCATTGCCAAATATACTCTAACCATGCTTAGAAGAAGAGTTCCTCCTGCTCTCCCTGGAATCATGTTTTTGTCTGGTGGACAATCCGAAGTGGAAGCAACACTAAATCTAAATGCCATGAACCAAAGTCCCAACCCATGGCATGTTTCTTTCTCATATGCACGGGCTCTTCAGAACACTGTGCTTAAGACATGGCAAGGACACCCTGAGAATGTGGAAGCTGCTCAAAAGTCCCTTTTGGTGCGCGCTAAAGCAAACTCCTTGGCTCAACTTGGAAGATACTCTGCTGAGGGTGAGAGTGAAGAGGCCAAGAAGGGAATGTTTGTCAAGGGCTATACCTACTAA

Predicted protein sequences of Glyma12g24190

Limit To All Plant Sequences

>Glyma12g24190.1   sequence type=predicted peptide   gene model=Glyma12g24190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASAKLNTLSSQWIAHNSFSPRRGSSSRRVSLPIRASSYQHELVQTAKSIASPSRGILAIDESNATCGKRLASIGLDNTEVNRQAYRQLLLTTPGLGEYISGAILFEETLYQSTTDGNKFVDCLRDQNIVPDIKVDKGLVPLPGSNNESWSAEYYKQGARFAKWRTVVSIPCGPSALAVKEAAWGLARYAAISQDNGLVPIVEPEILLDGDHPIERTLEVAEKVWSEVFFYLAENNVLFEGILLKPSMVTPGAEHTEKASPETIAKYTLTMLRRRVPPALPGIMFLSGGQSEVEATLNLNAMNQSPNPWHVSFSYARALQNTVLKTWQGHPENVEAAQKSLLVRAKANSLAQLGRYSAEGESEEAKKGMFVKGYTY*

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