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Report for Sequence Feature Glyma12g23950

Feature Type:gene_model
Chromosome:Gm12
Start:26693600
stop:26703518
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G30935AT Annotation by Michelle Graham. TAIR10: WRKY DNA-binding protein 32 | chr4:15051916-15053908 REVERSE LENGTH=466 SoyBaseE_val: 5.00E-113ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0043565GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding SoyBaseN/AISS
PF03106PFAM WRKY DNA -binding domain JGI ISS
UniRef100_A7LHI1UniRef Annotation by Michelle Graham. Most informative UniRef hit: WRKY44 (Fragment) n=1 Tax=Glycine max RepID=A7LHI1_SOYBN SoyBaseE_val: 0ISS
UniRef100_I1LT43UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LT43_SOYBN SoyBaseE_val: 0ISS

LocusGene SymbolProtein Name
WRKY44 WRKY Transcription Factor

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments
Glyma.12g152600 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma12g23950.2   sequence type=transcript   gene model=Glyma12g23950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TACACAAACAAGCCAAAAATGATAAATAGAACGACTTATCTCGAAGGAGAATGGAAATGCGTCAAGCCAATGAACAAAGACGAAGATGAGAAACCAAACGAAAAAGAAGAAGCTTGCTACATGAATAGAGAAGATCACAAACCCCCTAGAAGCGGAAGACAATGAATAGTAGAGAATAGGGACAATAGGGTGAATAGGGAACGGAAAAGAAGCAATGAAGGAGCAACGACGAAGGACTGAAGGAGAGGAGAAGCGTAGACGACAATGAATAGTATTCATACGAACGAGCCACTTGCTTTTATTTATAGAAAAAAGATGAAAAATATTTTAGCGTTTTCACATTAATTGCTTGGTGTCTCAAAAAAAATTCTAAGGTTCCACGGCAACACCCTCCCAATTAATACTAACGGTCCGAAGAGAAGAGAAAACGGGTATAGGGAAAGAGCTGACTGCTGAGTCTTCCAATCAAGTGTGGTCAGGATCAGAAGAACAACACGGCGTTAACAAAACCGTGAAATTGGATTAGAAGAGAAGCAACGGCGATGCAGGTCCAGTAGCAACGGCGATGCAGGTCCAGGAAGTCGTGGCAAAACCCGACAACCCACCTGGAAGAGAGAGAAAGAGCGTACTAGTCAATAGCAGTCAAAGACACATATACCCCGACACACATCACCTAGCTTTCTTCCTTTATTTCTTTCACAACACAATCCCAATGCACTCTCTCCATCAAATACCAATCAATCAAAAAGCCAGCGAGAAAATGAAAATTCGTGGTGGAATAATCATAGACTGAAGAGAAAAGTTGTCGTTGTGCAGTGCACTGTCATGGAAGAGGATGAAGAGACGCAGCAACGAGTCACTGACTCGTCCCTCTCCACCGAGTCACGCACTTCCACTCCTTCTGATGGAGCGCCACCCAACTCGGAAACCCTAGTTCACCGCTCCTCGCTTCCGCATGACCTTGCCACTCATATGCAGGGCAGCTCTACCGCACATAAAGGTGGAAAAGCTGAGAGTAAGGTGTCAGCTCAGCCTCCTGATGAGGAAACTATTGAAAAAGATGCAGTTGAGGCACCTCAAAAACAGACAGAAAATCAACTTCAGTCTGTTTGTTCAACTTCATTATCTGAACTATCACCAACTTCTGTTTCACATTCTTTATCATCTGCCCTTAGTCCCACTGTATCACAACAGAGACCATCTCCTCCCAAGGCTAATAGTGTACAAGTGTCGAAAGGAGACAAAGGAACACCTTCTGATGGTACAACCTTATCTTCTGTTTCTGCTGTAAGGGCATCTGCATCTGATGGATACAACTGGCGGAAGTACGGCCAGAAGCAAGTGAAGAATCCTATGGGTTCTCGAAGCTATTACAAGTGTACCCATTCAAATTGTTGTGCTAAGAAGATTAAATTTTGTGACCATTCAGGACATGTGATAGAGATTGTTTATAAAAGTCAACATAATCATGATCCTCCGCATAAAATTGATACCACCAAGGAAAGTAAGCTCCTGCCTTCCAGTGAACCTAAAGAAGAAAGCAGTGTTCCAAAGCAGTCTACCAAAGTTCTGAATAATTCTGATCCATCATCTTCTCCGAAAGAACCTTTGCAAGAAGCACCCTGCAATGGTGATAAGAATCTAGAAAACTCATCTAATGTTGAGAATGGTAAAATTATTTTGAAGGAAAAGCATGTCAATGACCGAGAGCCAAAAAGAAGATTGAACAATGGTGATTTGGATTCAGCAGTAAAACATGGCAAGAAACCAAAGTTTGTTGTACATGCGACAGAGGATGTGGGGATATCAGGTGATGGATACCGGTGGCGCAAGTATGGACAAAAGTTGGTGAAGGGAAATCCACATTTCAGATGCACTTCTTCTGGATGTCCTGTCCGAAAGCACATTGAGACTGCTGTGGATAATTCAAAAGCTCTCATCATAACATACAAGGGAGTGCATGATCATGACATGCCTGTACCCAAGAAACGACATGGCCCGCCTAGTGCTTCACTTGTGGCTGCGGCAGCACCTGCTTCAATGAACAATGTGCAGTTCAAAAAAACTGGCTTGCTGCAAAGCCAGGAAACTGAAGCTCAATGTTCAGAGGACACAGAAGGAGAATTGATGGGGGAAGCGATGGACCTTGAGGGTGAGAAAGCAATTGAGTCGGCTCGAACTCTTTTGAGCATAGGTTTTGAAATTAAACCTTGTTGAATACATCTTTTCATAAACTCATGCAGTTGCATCTATATAAATTAATTGGTAGGCCTCATGTAATTTTGGTGGTTTCCTATGTTTACCTTCTCTTTCTTGATTTCTTTACTCATGTATGTAGTCTTTTAGTGGAGCAGTTATATTTGCTTGTACACATGTTCAGCTTGTCTGAAACAGCTTGCGTAGTCGAGCGAATATGGAATTGACTTGTATCTTATTCTCAGGGAGAGTGAGAACAGGTGAGGATAGTGTTATCATTCAACTTCACTCACACATTGTTTGTTTGAGTGTAAATAGAAAGGAATGAAATAAAAAGGAAGTCGATAGAATAAAAATATGGGATTTCTGCTGTTTAGTTGGGA

>Glyma12g23950.1   sequence type=CDS   gene model=Glyma12g23950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGAGGATGAAGAGACGCAGCAACGAGTCACTGACTCGTCCCTCTCCACCGAGTCACGCACTTCCACTCCTTCTGATGGAGCGCCACCCAACTCGGAAACCCTAGTTCACCGCTCCTCGCTTCCGCATGACCTTGCCACTCATATGCAGGGCAGCTCTACCGCACATAAAGGTGGAAAAGCTGAGAGTAAGGTGTCAGCTCAGCCTCCTGATGAGGAAACTATTGAAAAAGATGCAGTTGAGGCACCTCAAAAACAGACAGAAAATCAACTTCAGTCTGTTTGTTCAACTTCATTATCTGAACTATCACCAACTTCTGTTTCACATTCTTTATCATCTGCCCTTAGTCCCACTGTATCACAACAGAGACCATCTCCTCCCAAGGCTAATAGTGTACAAGTGTCGAAAGGAGACAAAGGAACACCTTCTGATGGTACAACCTTATCTTCTGTTTCTGCTGTAAGGGCATCTGCATCTGATGGATACAACTGGCGGAAGTACGGCCAGAAGCAAGTGAAGAATCCTATGGGTTCTCGAAGCTATTACAAGTGTACCCATTCAAATTGTTGTGCTAAGAAGATTAAATTTTGTGACCATTCAGGACATGTGATAGAGATTGTTTATAAAAGTCAACATAATCATGATCCTCCGCATAAAATTGATACCACCAAGGAAAGTAAGCTCCTGCCTTCCAGTGAACCTAAAGAAGAAAGCAGTGTTCCAAAGCAGTCTACCAAAGTTCTGAATAATTCTGATCCATCATCTTCTCCGAAAGAACCTTTGCAAGAAGCACCCTGCAATGGTGATAAGAATCTAGAAAACTCATCTAATGTTGAGAATGGTAAAATTATTTTGAAGGAAAAGCATGTCAATGACCGAGAGCCAAAAAGAAGATTGAACAATGGTGATTTGGATTCAGCAGTAAAACATGGCAAGAAACCAAAGTTTGTTGTACATGCGACAGAGGATGTGGGGATATCAGGTGATGGATACCGGTGGCGCAAGTATGGACAAAAGTTGGTGAAGGGAAATCCACATTTCAGAAACTACTACAGATGCACTTCTTCTGGATGTCCTGTCCGAAAGCACATTGAGACTGCTGTGGATAATTCAAAAGCTCTCATCATAACATACAAGGGAGTGCATGATCATGACATGCCTGTACCCAAGAAACGACATGGCCCGCCTAGTGCTTCACTTGTGGCTGCGGCAGCACCTGCTTCAATGAACAATGTGCAGTTCAAAAAAACTGGCTTGCTGCAAAGCCAGGAAACTGAAGCTCAATGTTCAGAGGACACAGAAGGAGAATTGATGGGGGAAGCGATGGACCTTGAGGGTGAGAAAGCAATTGAGTCGGCTCGAACTCTTTTGAGCATAGGTTTTGAAATTAAACCTTGTTGA

>Glyma12g23950.2   sequence type=CDS   gene model=Glyma12g23950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGAGGATGAAGAGACGCAGCAACGAGTCACTGACTCGTCCCTCTCCACCGAGTCACGCACTTCCACTCCTTCTGATGGAGCGCCACCCAACTCGGAAACCCTAGTTCACCGCTCCTCGCTTCCGCATGACCTTGCCACTCATATGCAGGGCAGCTCTACCGCACATAAAGGTGGAAAAGCTGAGAGTAAGGTGTCAGCTCAGCCTCCTGATGAGGAAACTATTGAAAAAGATGCAGTTGAGGCACCTCAAAAACAGACAGAAAATCAACTTCAGTCTGTTTGTTCAACTTCATTATCTGAACTATCACCAACTTCTGTTTCACATTCTTTATCATCTGCCCTTAGTCCCACTGTATCACAACAGAGACCATCTCCTCCCAAGGCTAATAGTGTACAAGTGTCGAAAGGAGACAAAGGAACACCTTCTGATGGTACAACCTTATCTTCTGTTTCTGCTGTAAGGGCATCTGCATCTGATGGATACAACTGGCGGAAGTACGGCCAGAAGCAAGTGAAGAATCCTATGGGTTCTCGAAGCTATTACAAGTGTACCCATTCAAATTGTTGTGCTAAGAAGATTAAATTTTGTGACCATTCAGGACATGTGATAGAGATTGTTTATAAAAGTCAACATAATCATGATCCTCCGCATAAAATTGATACCACCAAGGAAAGTAAGCTCCTGCCTTCCAGTGAACCTAAAGAAGAAAGCAGTGTTCCAAAGCAGTCTACCAAAGTTCTGAATAATTCTGATCCATCATCTTCTCCGAAAGAACCTTTGCAAGAAGCACCCTGCAATGGTGATAAGAATCTAGAAAACTCATCTAATGTTGAGAATGGTAAAATTATTTTGAAGGAAAAGCATGTCAATGACCGAGAGCCAAAAAGAAGATTGAACAATGGTGATTTGGATTCAGCAGTAAAACATGGCAAGAAACCAAAGTTTGTTGTACATGCGACAGAGGATGTGGGGATATCAGGTGATGGATACCGGTGGCGCAAGTATGGACAAAAGTTGGTGAAGGGAAATCCACATTTCAGATGCACTTCTTCTGGATGTCCTGTCCGAAAGCACATTGAGACTGCTGTGGATAATTCAAAAGCTCTCATCATAACATACAAGGGAGTGCATGATCATGACATGCCTGTACCCAAGAAACGACATGGCCCGCCTAGTGCTTCACTTGTGGCTGCGGCAGCACCTGCTTCAATGAACAATGTGCAGTTCAAAAAAACTGGCTTGCTGCAAAGCCAGGAAACTGAAGCTCAATGTTCAGAGGACACAGAAGGAGAATTGATGGGGGAAGCGATGGACCTTGAGGGTGAGAAAGCAATTGAGTCGGCTCGAACTCTTTTGAGCATAGGTTTTGAAATTAAACCTTGTTGA

>Glyma12g23950.1   sequence type=predicted peptide   gene model=Glyma12g23950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEEDEETQQRVTDSSLSTESRTSTPSDGAPPNSETLVHRSSLPHDLATHMQGSSTAHKGGKAESKVSAQPPDEETIEKDAVEAPQKQTENQLQSVCSTSLSELSPTSVSHSLSSALSPTVSQQRPSPPKANSVQVSKGDKGTPSDGTTLSSVSAVRASASDGYNWRKYGQKQVKNPMGSRSYYKCTHSNCCAKKIKFCDHSGHVIEIVYKSQHNHDPPHKIDTTKESKLLPSSEPKEESSVPKQSTKVLNNSDPSSSPKEPLQEAPCNGDKNLENSSNVENGKIILKEKHVNDREPKRRLNNGDLDSAVKHGKKPKFVVHATEDVGISGDGYRWRKYGQKLVKGNPHFRNYYRCTSSGCPVRKHIETAVDNSKALIITYKGVHDHDMPVPKKRHGPPSASLVAAAAPASMNNVQFKKTGLLQSQETEAQCSEDTEGELMGEAMDLEGEKAIESARTLLSIGFEIKPC*

>Glyma12g23950.2   sequence type=predicted peptide   gene model=Glyma12g23950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEEDEETQQRVTDSSLSTESRTSTPSDGAPPNSETLVHRSSLPHDLATHMQGSSTAHKGGKAESKVSAQPPDEETIEKDAVEAPQKQTENQLQSVCSTSLSELSPTSVSHSLSSALSPTVSQQRPSPPKANSVQVSKGDKGTPSDGTTLSSVSAVRASASDGYNWRKYGQKQVKNPMGSRSYYKCTHSNCCAKKIKFCDHSGHVIEIVYKSQHNHDPPHKIDTTKESKLLPSSEPKEESSVPKQSTKVLNNSDPSSSPKEPLQEAPCNGDKNLENSSNVENGKIILKEKHVNDREPKRRLNNGDLDSAVKHGKKPKFVVHATEDVGISGDGYRWRKYGQKLVKGNPHFRCTSSGCPVRKHIETAVDNSKALIITYKGVHDHDMPVPKKRHGPPSASLVAAAAPASMNNVQFKKTGLLQSQETEAQCSEDTEGELMGEAMDLEGEKAIESARTLLSIGFEIKPC*







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