Report for Sequence Feature Glyma12g23910
Feature Type: gene_model
Chromosome: Gm12
Start: 26607199
stop: 26609761
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma12g23910
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT2G24230 AT
Annotation by Michelle Graham. TAIR10: Leucine-rich repeat protein kinase family protein | chr2:10301979-10304540 REVERSE LENGTH=853
SoyBase E_val: 0 ISS
GO:0006468 GO-bp
Annotation by Michelle Graham. GO Biological Process: protein phosphorylation
SoyBase N/A ISS
GO:0007169 GO-bp
Annotation by Michelle Graham. GO Biological Process: transmembrane receptor protein tyrosine kinase signaling pathway
SoyBase N/A ISS
GO:0005886 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane
SoyBase N/A ISS
GO:0004672 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein kinase activity
SoyBase N/A ISS
GO:0004674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity
SoyBase N/A ISS
GO:0005524 GO-mf
Annotation by Michelle Graham. GO Molecular Function: ATP binding
SoyBase N/A ISS
GO:0016772 GO-mf
Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups
SoyBase N/A ISS
KOG1187
KOG
Serine/threonine protein kinase
JGI ISS
PTHR24420 Panther
FAMILY NOT NAMED
JGI ISS
PTHR24420:SF73 Panther
SUBFAMILY NOT NAMED
JGI ISS
PF00560 PFAM
Leucine Rich Repeat
JGI ISS
PF07714 PFAM
Protein tyrosine kinase
JGI ISS
UniRef100_G7JGQ5 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Receptor-like protein kinase n=1 Tax=Medicago truncatula RepID=G7JGQ5_MEDTR
SoyBase E_val: 0 ISS
UniRef100_UPI0002339E3E UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI0002339E3E related cluster n=1 Tax=unknown RepID=UPI0002339E3E
SoyBase E_val: 0 ISS
Expression Patterns of Glyma12g23910
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Gene model name correspondences to Glyma12g23910 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.12g152400 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma12g23910
Coding sequences of Glyma12g23910
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma12g23910.2 sequence type=CDS gene model=Glyma12g23910 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGGTTTGGGAGTGTTTGGTTCTATTCTAATTCTGACGCTATTCTTCAAGCACTTGGCATCTCAACAACCAAACACTGATGATTTCTTTGTGTCTGAGTTCTTGAAGAAAATGGGTTTAGCAACTCCCCAGGTCTACAACTTTTCTGCTTCTGTTTGTTATGGGGTTTCATGTGATGCCAAGAGAGAACATGTTGTTGGCTTGCTCAAGAGCCTTAACCTCTCCTCCAATCAAATTTCTGGTTCATTGACTAACAACATTGGAAACTTTGGCTTGCTACATGTGTTTGACTTGTCCAGCAACAATTTCTCTGGGCAAATTCCTGAAGCTATTAGTTCCCTGATGAGTCTGAAAGTCCTCAAACTTAACCACAACAGGTTTGAGCAAAGACTACCTTCTGGGATTCTCCGGTGCCACTCTCTAGTTTCCATTGACCTTTCTTCAAATCAGCTAAGTGGGGCAATTCCAGATGGTTTTGGTGATGCTTTTCCTAACCTCATTACCTTGAACCTTGCCGGGAATAGTATTCATGGCAGTGATTCGGATATTTCTGGGTTGAAGTCCATTGTGAGTCTCAACATATCAGGCAATTCCTTTCATGGTTCTGTGATGAGTTTGTTTCATGGAAGGCTTGAGGTCATGGACCTTAGCAGAAACCAATTTGAAGGTCACATTTCTCAGATTGAAATTATCTTAGGATTGGAATATCTGAACTTGTCCAAAACTAGTCTGATTGGTTACATTCCTGCTGAAATCTCACAACTTAGTAATTTGAGTGCACTTGATGTTTCTATAAATCATCTTACTGGGAAAATCCCTTTACTAAGTAATAAAAACCTCCAAGTTCTTGACCTTTCAAACAACAATTTGAGTGGAGATGTCCCTTCGTCAGTCATAGAGAAACTACCTTTAATGGAGAAATACAACTTCTCTTATAATAACTTAACCTTCTGTGCTTTGGAAATCAAACCAGCTATCCTCCAAACAGTATTCTATGGATCAGTTAACAGTTTTCCAATTGCTGCAAACCCAAGTCTTCTTAAAAAAAGAGCCACTCAAGATAAGGGAATGAAGCTAGCTCTGGCATTGACCCTCTCAATGATCTGCTTGGTTGCTGGGGTTTTGCGTCTAGCATTTGGTTGCCTTAAGAAAACAAAGCCATGGCTTGTTAAGCAGACTTCATACAAAGAAGAACACAATATGTCAGGTCCCTTTTCATTCCACACTGATTCAACCACTTGGGTGGCTGATGTTAAGCAAGCAACATCTGTCCCGGTAATAATCTTTGATAAGCCACAGTTAAATATTACATTTGCAGACCTATTGGATGCAAATTCAAATTTTGACAGCGGTACCCTTTTGGCTGAAGGAAAATTTGGGCCTGTTTATAGAGGTTTTCTACCTGGTGGTATTCATGTAGCAGTTAAAGTTCTGGTGGTTGGATCTACTCTGACAGATAAAGAAGCTGCAAGAGAGCTCGAGTATCTTGGTAGAATCAAGCACCCCAATCTTGTTCCTCTAACTGGGTATTGTGTAGCTGGGGATCAGAGGATTGCCATATATGACTACATGGAGAATGGGAACTTGCAAAATTTGCTTTATGACTTGCCACTTGGTGTACTACAAAGGACAGATGATTGGAGCACAGATACATGGGAAGAAGATGATGGCAGTAATGGGATTCAAAACGCAGGATCAGAAGGAGTGCTCACAACTTGGAGATTTCGCCATAAAATCGCACTCGGCACTGCCCGAGCATTGGCATTTCTGCATCATGGATGCTCCCCACCGATCATCCACAGAGATGTTAAGGCTAGCCGTATTTGCGGGAGTGGCTTGGATGAGGAGATTGCGCTTTGTTCACCTGGTTATGCTCCACCAGAGTTTTATCAACCAGAATTTGACGCCTCAATTCTAAAATCTGATGTGTACTGTTTTGGGGTTGTTCTCTTTGAGCTACTAACCGGGAAGAAGCCAGTTGGAGATGATTATCCTGATGAGAAAGAATCAACTTTGGTTAGTTGGGTCAGAAGACTAGTGAGAAAGAACAAATCTCCGAATGCTATCGATCGAAAATTCGAGGCCCTTAAGATTGGTTATCTGTGCACTGCTGACCATCCTTTCAAGCGACCAAGCATGCAGCAGATAGTTGGGCTTCTTAAAGATATTGAACCTTCTGCTAATTAG
Predicted protein sequences of Glyma12g23910
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma12g23910.2 sequence type=predicted peptide gene model=Glyma12g23910 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MGLGVFGSILILTLFFKHLASQQPNTDDFFVSEFLKKMGLATPQVYNFSASVCYGVSCDAKREHVVGLLKSLNLSSNQISGSLTNNIGNFGLLHVFDLSSNNFSGQIPEAISSLMSLKVLKLNHNRFEQRLPSGILRCHSLVSIDLSSNQLSGAIPDGFGDAFPNLITLNLAGNSIHGSDSDISGLKSIVSLNISGNSFHGSVMSLFHGRLEVMDLSRNQFEGHISQIEIILGLEYLNLSKTSLIGYIPAEISQLSNLSALDVSINHLTGKIPLLSNKNLQVLDLSNNNLSGDVPSSVIEKLPLMEKYNFSYNNLTFCALEIKPAILQTVFYGSVNSFPIAANPSLLKKRATQDKGMKLALALTLSMICLVAGVLRLAFGCLKKTKPWLVKQTSYKEEHNMSGPFSFHTDSTTWVADVKQATSVPVIIFDKPQLNITFADLLDANSNFDSGTLLAEGKFGPVYRGFLPGGIHVAVKVLVVGSTLTDKEAARELEYLGRIKHPNLVPLTGYCVAGDQRIAIYDYMENGNLQNLLYDLPLGVLQRTDDWSTDTWEEDDGSNGIQNAGSEGVLTTWRFRHKIALGTARALAFLHHGCSPPIIHRDVKASRICGSGLDEEIALCSPGYAPPEFYQPEFDASILKSDVYCFGVVLFELLTGKKPVGDDYPDEKESTLVSWVRRLVRKNKSPNAIDRKFEALKIGYLCTADHPFKRPSMQQIVGLLKDIEPSAN*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
