Report for Sequence Feature Glyma12g22690
Feature Type: gene_model
Chromosome: Gm12
Start: 24696684
stop: 24698389
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma12g22690
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G54400 AT
Annotation by Michelle Graham. TAIR10: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr5:22090680-22091998 FORWARD LENGTH=292
SoyBase E_val: 7.00E-126 ISS
GO:0008152 GO-bp
Annotation by Michelle Graham. GO Biological Process: metabolic process
SoyBase N/A ISS
GO:0005737 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm
SoyBase N/A ISS
GO:0005774 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane
SoyBase N/A ISS
GO:0008168 GO-mf
Annotation by Michelle Graham. GO Molecular Function: methyltransferase activity
SoyBase N/A ISS
PTHR10108 Panther
METHYLTRANSFERASE
JGI ISS
PTHR10108:SF242 Panther
METHYLTRANSFERASE
JGI ISS
PF08241 PFAM
Methyltransferase domain
JGI ISS
UniRef100_B9SID2 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: S-adenosylmethionine-dependent methyltransferase, putative n=1 Tax=Ricinus communis RepID=B9SID2_RICCO
SoyBase E_val: 3.00E-126 ISS
UniRef100_UPI000233D60A UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233D60A related cluster n=1 Tax=unknown RepID=UPI000233D60A
SoyBase E_val: 0 ISS
Expression Patterns of Glyma12g22690
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma12g22690
Paralog Evidence Comments
Glyma06g38480 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma12g22690 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.12g148500 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma12g22690
Coding sequences of Glyma12g22690
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma12g22690.1 sequence type=CDS gene model=Glyma12g22690 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGGAAAAACATCAAGCAGAGAGTGGACACGGATCTACCTCATCTACGGAATGGATCAGTGGCAAACCTTCGTCTTCCTTCTATGTCAAGCGGTTCTCTTCTCAGTTCTCTCAATACTTTACCTTCTCTACTTCAATGACATCTCTCACACTTTCCAAAGCCTTCTCTCCATCGCCTCCGTGCCCTGCAGCGCCGCCCGCTTCGCCGCCGGGTTTATGGGCTCCGTCACGGCGCTCTCCGCGCTGTGCCTCTTCTACGCGGCGGCGAATTTCTTCTACTCGGCAGTGCCGCTCCATTCTGAGATGGCACAGCACATCGTGGACACAGTCAATGACTGGCCGACGGTGCGACAGGTGCTCGATCTCGGCTGCTGCGGTCGCGGCATTCTGCTGAATGCCGTGGCCGCCCGTCTTAAAAAGGAAGGAAGTTCGGGTCGGGTGATCGGGTTAAGCGGCCAGAACAAGACAGAATTAGCGGCCACGCTTCGGGCTGCTAAGGTGGAGGGTGTGGAGGAATACGTAACGTGCCGGACAGGTGATGCCACCACGTTGCCGTTTTTAGACGACAGCTTCGATGCTGTTGTGTCCGGTACGTTCGTGCACACCGTGGGATGGGGGCACGCTGCCGATGTGGCGGCAGCGGAGAGGGGGAGGGTGGTGGCGGAGGTGGTGAGGGTGTTGAAGGAGGGTGGGGTTGGGGTTGTGTGGGACCTTGTGCACGTGCCAGAGTACGTGCGACGGTTACAAGAGATGAAGATGGAAGACATTAGAATGAGCGAGCGTGTGACGGCGTTCATGGTTAGCAGCCACGTCGTGTCCTTCAGGAAGCCCACTCACCACGTGCATGGCCCACCAGAGGTCAGGTTGGATTGGAGATTCTGCTGA
Predicted protein sequences of Glyma12g22690
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma12g22690.1 sequence type=predicted peptide gene model=Glyma12g22690 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MGKTSSREWTRIYLIYGMDQWQTFVFLLCQAVLFSVLSILYLLYFNDISHTFQSLLSIASVPCSAARFAAGFMGSVTALSALCLFYAAANFFYSAVPLHSEMAQHIVDTVNDWPTVRQVLDLGCCGRGILLNAVAARLKKEGSSGRVIGLSGQNKTELAATLRAAKVEGVEEYVTCRTGDATTLPFLDDSFDAVVSGTFVHTVGWGHAADVAAAERGRVVAEVVRVLKEGGVGVVWDLVHVPEYVRRLQEMKMEDIRMSERVTAFMVSSHVVSFRKPTHHVHGPPEVRLDWRFC*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
