Glyma12g22380 - SoyBase

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Report for Sequence Feature Glyma12g22380

Feature Type:	gene_model
Chromosome:	Gm12
Start:	24362432
stop:	24364668
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g22380

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
UniRef100_C6T4Y5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T4Y5_SOYBN	SoyBase	E_val: 4.00E-91	ISS

Expression Patterns of Glyma12g22380

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g22380

Paralog	Evidence	Comments
Glyma06g39640	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g22380 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g147600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g22380

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma12g22380

Limit To All Plant Sequences

>Glyma12g22380.1   sequence type=CDS   gene model=Glyma12g22380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCGCCGCCGTGACCGATATGGCCCGCCGTCACACGATTAGCCAAATACTGGTCGACCTCGTCAAGTTCGCCGTCGGTTCCGCCATCGACGGCTCACGCAGAATCATCCCTGGTAGGAAGCAGGTAGATAAGATGGTGCCAGAAGGATTAATAAACATACCCTTGCCAACCCCTTTAAAGGCCAAGAAACACCCTGATTTAAAGGTTGCAAATGACCTCCCTTTTGAGACAAAAATGGAGGAAGTGAAGGAAGACATGAATAACCTAAAGCAGCAGTACGAAGCATCAATCAAACGTGTTGAAGAATCACAGCCGCCAAACAAATCTGATGGCGGCTTTAAGGAAATCAATCTTGTGCAGGGCAATGGAAGGAGGGTATTCATTCGATCTCGTCTATAG

Predicted protein sequences of Glyma12g22380

Limit To All Plant Sequences

>Glyma12g22380.1   sequence type=predicted peptide   gene model=Glyma12g22380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAAAVTDMARRHTISQILVDLVKFAVGSAIDGSRRIIPGRKQVDKMVPEGLINIPLPTPLKAKKHPDLKVANDLPFETKMEEVKEDMNNLKQQYEASIKRVEESQPPNKSDGGFKEINLVQGNGRRVFIRSRL*

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