Glyma12g22350 - SoyBase

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Report for Sequence Feature Glyma12g22350

Feature Type:	gene_model
Chromosome:	Gm12
Start:	24333120
stop:	24338294
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g22350

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G54290	AT	Annotation by Michelle Graham. TAIR10: cytochrome c biogenesis protein family \| chr5:22051097-22053923 FORWARD LENGTH=355	SoyBase	E_val: 1.00E-141	ISS
GO:0010190	GO-bp	Annotation by Michelle Graham. GO Biological Process: cytochrome b6f complex assembly	SoyBase	N/A	ISS
GO:0017004	GO-bp	Annotation by Michelle Graham. GO Biological Process: cytochrome complex assembly	SoyBase	N/A	ISS
GO:0045454	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell redox homeostasis	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009534	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0055035	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastid thylakoid membrane	SoyBase	N/A	ISS
PF02683	PFAM	Cytochrome C biogenesis protein transmembrane region	JGI		ISS
UniRef100_Q7XY14	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: C-type cytochrome biogenesis protein n=1 Tax=Glycine max RepID=Q7XY14_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q7XY14	UniRef	Annotation by Michelle Graham. Best UniRef hit: C-type cytochrome biogenesis protein n=1 Tax=Glycine max RepID=Q7XY14_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma12g22350

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g22350

Paralog	Evidence	Comments
Glyma06g39700	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g22350 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g147300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g22350

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma12g22350

Limit To All Plant Sequences

>Glyma12g22350.2   sequence type=transcript   gene model=Glyma12g22350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTGTCAAATTAAGCATTTAAGAGAACATAGATAACCGCCACAACTCAACAACTTCTCGGGGTTTGGATTTTTTCATTCCGCATAGGTTCCGTGTTCCAAACAGTAAGGAACTACTCTCTTCTCTTCTATGCTCTGTAACTCTCTAGACGATGAGTTTGAGTATGAGCTTGTGTGGTAGTTACAGTCTTCAAATTCGAAATCGCAGAATTGTAAGCTGCAATCTTCACCAGGATGGCAGGCATATTGTTCCCATCAATACGCACCAAAAAACTTCCAAACCTGAAAATTGTCTTCGGTCCAAATGGAAGATTAATGGCAATAACATTAGGACATGCATTGGAGTCATGACAGTGGCACACTTGGTTGCTCCAGTCACTGCAAAAGCTGAAGTGGCTGCTTCTATTTATGCTTTGGCTGATGGAAGCCTCAATGACTGGTTTGGAGGCTTTCTATATTCAGCTGGACAACAGGCCAATGAAGCTGTTCAGGGCCAATTAACCTCTCTCAGTTTCACTAGTTTGGCTGTAATTTATGGGGCAGGGCTTGTGACCAGCCTTTCTCCCTGTACACTTAGTGTCTTACCACTGACCCTTGGTTACATTGGGGCATTTGGCTCTGGCAAAAGCAGAGCAGAGGTTGTAGGAGATTCCATTGCATTCTCCTTAGGTCTTGCAACCACATTAGCACTGTTGGGTGTTGGAGCTTCATTTGCAGGAAAGGCTTATGGACAGATTGGCCAAGGATTACCTTTGGCTGCTTCTGGTTTGGCTATAATTATGGGTCTGAATCTTCTTGAGATCATTGAGTTACGGCTGCCCTCATTCTTTGACAGTTTTGATCCACGTGCAGCCGCTGCCAATTTCCCATCCAGTGTGCAAGCCTACCTGGCTGGGCTTACATTTGCTTTAGCTGCCTCACCTTGTAGTACACCTGTTCTGGCCACTCTTTTGGGATATGTTGCTGCATCCAAGGATCCTGTGATTGGAGGCAGCTTACTTTTGACTTACACAACTGGCTATGTTTCTCCTTTACTCTTGGCTGCTTCTTTTGCTGGAGCATTACAGGTCAGTACATGACATTTTTGGTTTCATAAAATAACTTTCTAATTCTAAAATTCAGATGTCTCGTGGAGAACAATATTTCTGATTTGAATCTGTATTGATAGAGCTTGCTCTCATTTCGCAAGTTCTCAGCATGGATCAATCCTATAAGGTAATTTTTGAACTTTTAATAAAGAGTGCACACTCATGTTCCCCCTACACAATTTATGGTATGATTATTTTCTAGTTTTTAGAGACTAGAGTATCCACTTGTTGAATTTCATAGTTTCCATGGTTTCTTATGCATGTTACAATTTTCTTGTCCCACAGCGGAGCAATGCTGTTAGGTGGTGGTGTATATACTTTCTTAGATAGGCTGTTCCCAGTCACAATGGTGATGTAGAAAATCTCTTGGCTCTAACACGCTGTGATCTTTTTTACTTTTTACCGTTCAATGTATATATGTCACACAAGTACTCAATTGAAATAGAAATCCAAATGAGACTTTGCATACCACGGCCGAATTTTCTTCATCCAATTACATAATATATTTGTTGGTTTAATTTTCTTCCTAGCCGAATTTGGCGTGCAGAATATTATATTGGTAGGGAACTTACTGCATTGGATCATTTATTAACTTCAACGGAGCAAAATTTTGATAATGATAATCACAATGACCAAAGCATCCTCTCCTTTAAGGGATGTGAATTGCAGTCTTCATGGTTTCAATCTCACATTGGGTCAGTCTCTTTAAACATAAGCTGTGGTGGTACATTCATTACTGGTACGAAAGATTAAGGGTGTGTTTGTTTTACCCTTTCAATCCATTAGCATG

Coding sequences of Glyma12g22350

Limit To All Plant Sequences

>Glyma12g22350.1   sequence type=CDS   gene model=Glyma12g22350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTTTGAGTATGAGCTTGTGTGGTAGTTACAGTCTTCAAATTCGAAATCGCAGAATTGTAAGCTGCAATCTTCACCAGGATGGCAGGCATATTGTTCCCATCAATACGCACCAAAAAACTTCCAAACCTGAAAATTGTCTTCGGTCCAAATGGAAGATTAATGGCAATAACATTAGGACATGCATTGGAGTCATGACAGTGGCACACTTGGTTGCTCCAGTCACTGCAAAAGCTGAAGTGGCTGCTTCTATTTATGCTTTGGCTGATGGAAGCCTCAATGACTGGTTTGGAGGCTTTCTATATTCAGCTGGACAACAGGCCAATGAAGCTGTTCAGGGCCAATTAACCTCTCTCAGTTTCACTAGTTTGGCTGTAATTTATGGGGCAGGGCTTGTGACCAGCCTTTCTCCCTGTACACTTAGTGTCTTACCACTGACCCTTGGTTACATTGGGGCATTTGGCTCTGGCAAAAGCAGAGCAGAGGTTGTAGGAGATTCCATTGCATTCTCCTTAGGTCTTGCAACCACATTAGCACTGTTGGGTGTTGGAGCTTCATTTGCAGGAAAGGCTTATGGACAGATTGGCCAAGGATTACCTTTGGCTGCTTCTGGTTTGGCTATAATTATGGGTCTGAATCTTCTTGAGATCATTGAGTTACGGCTGCCCTCATTCTTTGACAGTTTTGATCCACGTGCAGCCGCTGCCAATTTCCCATCCAGTGTGCAAGCCTACCTGGCTGGGCTTACATTTGCTTTAGCTGCCTCACCTTGTAGTACACCTGTTCTGGCCACTCTTTTGGGATATGTTGCTGCATCCAAGGATCCTGTGATTGGAGGCAGCTTACTTTTGACTTACACAACTGGCTATGTTTCTCCTTTACTCTTGGCTGCTTCTTTTGCTGGAGCATTACAGAGCTTGCTCTCATTTCGCAAGTTCTCAGCATGGATCAATCCTATAAGCGGAGCAATGCTGTTAGGTGGTGGTGTATATACTTTCTTAGATAGGCTGTTCCCAGTCACAATGGTGATGTAG

>Glyma12g22350.2   sequence type=CDS   gene model=Glyma12g22350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTTTGAGTATGAGCTTGTGTGGTAGTTACAGTCTTCAAATTCGAAATCGCAGAATTGTAAGCTGCAATCTTCACCAGGATGGCAGGCATATTGTTCCCATCAATACGCACCAAAAAACTTCCAAACCTGAAAATTGTCTTCGGTCCAAATGGAAGATTAATGGCAATAACATTAGGACATGCATTGGAGTCATGACAGTGGCACACTTGGTTGCTCCAGTCACTGCAAAAGCTGAAGTGGCTGCTTCTATTTATGCTTTGGCTGATGGAAGCCTCAATGACTGGTTTGGAGGCTTTCTATATTCAGCTGGACAACAGGCCAATGAAGCTGTTCAGGGCCAATTAACCTCTCTCAGTTTCACTAGTTTGGCTGTAATTTATGGGGCAGGGCTTGTGACCAGCCTTTCTCCCTGTACACTTAGTGTCTTACCACTGACCCTTGGTTACATTGGGGCATTTGGCTCTGGCAAAAGCAGAGCAGAGGTTGTAGGAGATTCCATTGCATTCTCCTTAGGTCTTGCAACCACATTAGCACTGTTGGGTGTTGGAGCTTCATTTGCAGGAAAGGCTTATGGACAGATTGGCCAAGGATTACCTTTGGCTGCTTCTGGTTTGGCTATAATTATGGGTCTGAATCTTCTTGAGATCATTGAGTTACGGCTGCCCTCATTCTTTGACAGTTTTGATCCACGTGCAGCCGCTGCCAATTTCCCATCCAGTGTGCAAGCCTACCTGGCTGGGCTTACATTTGCTTTAGCTGCCTCACCTTGTAGTACACCTGTTCTGGCCACTCTTTTGGGATATGTTGCTGCATCCAAGGATCCTGTGATTGGAGGCAGCTTACTTTTGACTTACACAACTGGCTATGTTTCTCCTTTACTCTTGGCTGCTTCTTTTGCTGGAGCATTACAGGTCAGTACATGA

Predicted protein sequences of Glyma12g22350

Limit To All Plant Sequences

>Glyma12g22350.1   sequence type=predicted peptide   gene model=Glyma12g22350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSLSMSLCGSYSLQIRNRRIVSCNLHQDGRHIVPINTHQKTSKPENCLRSKWKINGNNIRTCIGVMTVAHLVAPVTAKAEVAASIYALADGSLNDWFGGFLYSAGQQANEAVQGQLTSLSFTSLAVIYGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAEVVGDSIAFSLGLATTLALLGVGASFAGKAYGQIGQGLPLAASGLAIIMGLNLLEIIELRLPSFFDSFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVAASKDPVIGGSLLLTYTTGYVSPLLLAASFAGALQSLLSFRKFSAWINPISGAMLLGGGVYTFLDRLFPVTMVM*

>Glyma12g22350.2   sequence type=predicted peptide   gene model=Glyma12g22350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSLSMSLCGSYSLQIRNRRIVSCNLHQDGRHIVPINTHQKTSKPENCLRSKWKINGNNIRTCIGVMTVAHLVAPVTAKAEVAASIYALADGSLNDWFGGFLYSAGQQANEAVQGQLTSLSFTSLAVIYGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAEVVGDSIAFSLGLATTLALLGVGASFAGKAYGQIGQGLPLAASGLAIIMGLNLLEIIELRLPSFFDSFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVAASKDPVIGGSLLLTYTTGYVSPLLLAASFAGALQVST*

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