SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G54280 | AT | Annotation by Michelle Graham. TAIR10: myosin 2 | chr5:22039606-22045592 REVERSE LENGTH=1220 | SoyBase | E_val: 0 | ISS |
| GO:0030048 | GO-bp | Annotation by Michelle Graham. GO Biological Process: actin filament-based movement | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0016459 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: myosin complex | SoyBase | N/A | ISS |
| GO:0003774 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: motor activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| KOG0160 | KOG | Myosin class V heavy chain | JGI | ISS | |
| PTHR13140 | Panther | MYOSIN | JGI | ISS | |
| PTHR13140:SF37 | Panther | MYOSIN-VII | JGI | ISS | |
| PF00063 | PFAM | Myosin head (motor domain) | JGI | ISS | |
| PF00612 | PFAM | IQ calmodulin-binding motif | JGI | ISS | |
| UniRef100_G7IR58 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Myosin-like protein n=1 Tax=Medicago truncatula RepID=G7IR58_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233D603 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233D603 related cluster n=1 Tax=unknown RepID=UPI000233D603 | SoyBase | E_val: 0 | ISS |
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Glyma12g22300 not represented in the dataset |
Glyma12g22300 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma06g39740 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.12g147000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma12g22300.1 sequence type=CDS gene model=Glyma12g22300 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTGTTATCGGCTTCGCCATGTTCCTTGGCGAGAAGCTCGCTAGAGGAGATGCTCGATTCCCTTCGCCGGAGGGACGAGGAGGAGGAGAAGAAGGACTCGCCACCGGCGTTGCCCGCGAGGCCGGCCTCGCGGGCACGGCTTCCTCCGGCACGGCGGTCGCTGCCGAACAACTTCAGGGTTGGCGGCAGCCAGCGCGTCATCGCGCCCGAAAATGGAGTCGGTACTAATGGGGAGAGTGACTTGAAGGAGAATGACTTGGGGCAGAAAAGGAGAAGAAATTGTTTTGAGAGAAAGAGGATGAACAAGGATGTGGAGTCTCCTTATGTGGCACTCTCTTCCAGTGATTCATCAGGGATGGTTTGGGAATTGGATGATGATGATAACATTTCTTATTTCATCAAAAAGAAGCTTCGTGTTTGGTGTAGGCAACCAAGAGGGCAGTGGGAACTAGGAACAATACAGTCAACTTCAGGAGAGGAAGCATCCATTTCACTCTCAAATGGAAATGTTATTAAAGTGGTCAGATCAGAGATTCTACCAGCGAATCCTGGTGTTTTAGAGGGTGTGGATGATCTTATTAAACTTGGTTATTTGAACGAGCCATCGGTTCTTCACAATCTGAAGTTGAGATATTCTCAAGGAATGATTTATAATAAAGCAGGGCCAATTTTAATTGCCCTCAATCCTTTCAAAGATCTTCAGACAAATGGAAATGATTATGTCTCAGCTTATAGGCAGAGAATTATTGATAGTCTTCATGTTTATGCTGTGGCAGATGTGGCTTATAACAAGATGATAAGAGATGAAGTAAATCAGTCCATTATCATAAGTGGTGAGAGTGGATCTGGGAAGACAGAAACAGCTAAAATTGCATTGCAACACTTAGCTGCTCTTGGTGGTGGTGGCAGTTGTGCTATAGAAAATGAATTTCTTCAGATAAATCGTATACTAGAAGCTTTTGGGAATGCAAAAACATCTAGGAATAACAACTCTAGCAGATTTGGAAAGTTGATTGAAGTTCATTTCAGCTCCATGGGTAAAATATGTGGGGCTAAAATTAAAACCTTATTGTTGGAAAAGTCTAGAGTTGTTCAACTGGCCAATGGTGAGAGATCATATCACATATTTTATCAACTTTGTGCTGGATCTTCTTCTGATCTTAAAGAGAGACTGAATCTTAGAGCAGTCTGTGAATATAAATATCTAGTTCAGAGTGACTGCACATCAATTGATGATGCCGATGATGCTAAAAACTTTCCTCAGCTGAAGAAAGCCCTGGATACTGTTCAAATTTGTAAAGAGGATCAAGAGATGATCTTTAAGATGCTCGCTGCAATACTATGGCTGGGAAATATATCATTCCAAGTAGACAGTGAAAATCACATTGAGGTTGTTGATGATGAAGCTGTAACCAGTACTGCCCAGCTGATGGGTTGCAGTTCCCAGGAATTAATGACAGCATTATGTAGCCATAAAATTCAATCTGACGAGGATACTATTGCCAAAAATCTGACATTGAGGCAGGCAATCGAAAGAAGAGATGCAATTGCAAAATTCATCTATGCAAGCTTGTTTGACTGGCTTGTAGAACAAGTTAACAAGTCACTTGAAGTGGGTAAACAATATACTGGGAAATCCATAAGTATCCTAGATATTTATGGGTTTCAGACTTTCCAGAAAAACAGCTTTGAACAGTTTTATATAAATTATGCCAATGAGAGGATTCAACAACATTTTAATCGGCATCTGTTTAAACTTGAGCAGGAGGATTATGAATTGGATGGCGTTGATTGGACTAAGGTAGATTTTGAGGATAATGAAGTGTGCTTGGATCTATTTGAGAAGAAACCTCACGGTCTACTCTCTTTATTGGATGAGGAGTCAAATTTAGCCAAGGCTTCTGATTTAACATTTGCCAACAAACTTAAGCACCACCTGAATGCTAATCCTTGCTTCAAAGGAGAAAAAGGCAGAGCTTTCCGTGTTCGTCACTATGCAGGGGAGGTTCTGTATGATACAAATGGCTTTCTAGAAAAGAACAGAGACATGTTGTCTTCTGATTCCATTCAATTCCTGTCATCATGTAATTGTGAACTGCTGCAGTTGTTCTCCAAAATGTTTAACCAGTCTCAAATGCAGAGTGTTGCAACAAAGTTCAAGGTTCAATTGTTCATGTTGATGCATCAGTTGGAGAGTACCACACCTCACTTTATTCGCTGTATAAAGCCAAATACTAAGCAGCTTCCTGGCATTTTTGATGAAGTCCTTGTCCTACAACAGCTCAGATGTTGTGAAGTTCTAGAAGTTGTTAGAGTTTCAAGGGCTGGATATCCTACTCGAATGGCCCATCAAGAGTTTTCCAGAAGGTATGGGTTTCTGCTTTCTGAGGCCAATGTATTGCAGGATCCATTGAGCATCTCGGTTGCTGTTTTGCAAAAATTTAATATCCCTTCTGAAATGTACCATGTTGGCTACACCAAATTGTATCTTCGAGCAGGGCAGATTGATTCACTGGAGAATAAGAGAAAGCAGGTTTTACAGGGAATACTTGGGATTCAAAAATGCTTCCGTGGTCATCGAGCTCGTGTTTATTTCTGTGAACTTAAGAATGGAGTGACAACATTGCAATCATTTATTCGTGGAGAAAATACAAGAAGGAAATATGGTGTTACAGTGAAGTCTTCAGTAACAATTTATTCTAGAATACTGGAGGAGATCCATGCAATCATACTATTACAATCTGTAATTCGTGGTTGGCTGGTTAGAAGGGGGGATGCTAGTCACATAAATAGGTCAAAGAGATATCCTGAAAATGCTAAACCTAGGTGGAAGTCCTTTATGAAGATAATACCGGAAGTAAAGCCGGACTTGTCCAAAGAGCCGGTTCAGAATCTGCTTTCAGCTTTAGCAGATCTCCAAAGGCGAGTTGACAAGGCTGATGCAATTGTGAAGCAAAAGGAAGACGAAAATACCGAATTGAGGGAACAGCTAAAACAATCTGAGAGGAAGAGGATCGAATATGAGACAAAAATGAAATCAATGGAGGAGGCTTGGCAAAAGCAGATGGCATCTTTGCAAATGAGTCTTGTTGCTGCTAGAAAGAGCCTTGCTCCCGAGAATGCTTCAGTTCAGCCTGTAAGACGTGATTTTGTGCTACCTCGTGGTTATGATTCTGAAGATGCTACATCCATGGGATCTCGAACACCTGGTGGGAGCACACCAATGCTTTCTGGTAGTCTATCTGCCTCTGATGCAGGGAGACAGGTCAATGGTACATTGACCACAGTTGGCAATCTGATGAAGGAATTCGAGCAGGAAAGACAGAACTTTGATGATGAAGTGAAAGCTTTGAACGATGTTAAACCGGAGCAGTCTGCCAATACAAATTCCTTTGAAGAGCTTCGGAAACTGAAACAGAGATTTGAGGGATGGAAGAATCAATACAAGGTTAGATTACGAGAGACTAAAACAAGGCTTTATAAATCAGAAACGGAAAAAAGTCGGCGAACATGGTGGGGGAAGTTAAGCTCAAAAGCATAA
>Glyma12g22300.1 sequence type=predicted peptide gene model=Glyma12g22300 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVLSASPCSLARSSLEEMLDSLRRRDEEEEKKDSPPALPARPASRARLPPARRSLPNNFRVGGSQRVIAPENGVGTNGESDLKENDLGQKRRRNCFERKRMNKDVESPYVALSSSDSSGMVWELDDDDNISYFIKKKLRVWCRQPRGQWELGTIQSTSGEEASISLSNGNVIKVVRSEILPANPGVLEGVDDLIKLGYLNEPSVLHNLKLRYSQGMIYNKAGPILIALNPFKDLQTNGNDYVSAYRQRIIDSLHVYAVADVAYNKMIRDEVNQSIIISGESGSGKTETAKIALQHLAALGGGGSCAIENEFLQINRILEAFGNAKTSRNNNSSRFGKLIEVHFSSMGKICGAKIKTLLLEKSRVVQLANGERSYHIFYQLCAGSSSDLKERLNLRAVCEYKYLVQSDCTSIDDADDAKNFPQLKKALDTVQICKEDQEMIFKMLAAILWLGNISFQVDSENHIEVVDDEAVTSTAQLMGCSSQELMTALCSHKIQSDEDTIAKNLTLRQAIERRDAIAKFIYASLFDWLVEQVNKSLEVGKQYTGKSISILDIYGFQTFQKNSFEQFYINYANERIQQHFNRHLFKLEQEDYELDGVDWTKVDFEDNEVCLDLFEKKPHGLLSLLDEESNLAKASDLTFANKLKHHLNANPCFKGEKGRAFRVRHYAGEVLYDTNGFLEKNRDMLSSDSIQFLSSCNCELLQLFSKMFNQSQMQSVATKFKVQLFMLMHQLESTTPHFIRCIKPNTKQLPGIFDEVLVLQQLRCCEVLEVVRVSRAGYPTRMAHQEFSRRYGFLLSEANVLQDPLSISVAVLQKFNIPSEMYHVGYTKLYLRAGQIDSLENKRKQVLQGILGIQKCFRGHRARVYFCELKNGVTTLQSFIRGENTRRKYGVTVKSSVTIYSRILEEIHAIILLQSVIRGWLVRRGDASHINRSKRYPENAKPRWKSFMKIIPEVKPDLSKEPVQNLLSALADLQRRVDKADAIVKQKEDENTELREQLKQSERKRIEYETKMKSMEEAWQKQMASLQMSLVAARKSLAPENASVQPVRRDFVLPRGYDSEDATSMGSRTPGGSTPMLSGSLSASDAGRQVNGTLTTVGNLMKEFEQERQNFDDEVKALNDVKPEQSANTNSFEELRKLKQRFEGWKNQYKVRLRETKTRLYKSETEKSRRTWWGKLSSKA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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