Report for Sequence Feature Glyma12g22290
Feature Type: gene_model
Chromosome: Gm12
Start: 24182615
stop: 24185419
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma12g22290
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G16480 AT
Annotation by Michelle Graham. TAIR10: Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:5625843-5628656 REVERSE LENGTH=937
SoyBase E_val: 0 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005739 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
PTHR24015 Panther
FAMILY NOT NAMED
JGI ISS
PF01535 PFAM
PPR repeat
JGI ISS
UniRef100_G7IZF9 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein n=1 Tax=Medicago truncatula RepID=G7IZF9_MEDTR
SoyBase E_val: 0 ISS
UniRef100_UPI000233CE9A UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233CE9A related cluster n=1 Tax=unknown RepID=UPI000233CE9A
SoyBase E_val: 0 ISS
Expression Patterns of Glyma12g22290
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Gene model name correspondences to Glyma12g22290 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.12g146900 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma12g22290
Coding sequences of Glyma12g22290
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma12g22290.2 sequence type=CDS gene model=Glyma12g22290 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTACTCTAAGTTTGGCAGCATCGAGCATGCACAACACGTGTTTGATAAAATGCCTGAGAGAAACGAAGCTTCTTGGAATAACTTGATGTCGGGGTTTGTTCGAGTGGGGTGGTATCAAAAAGCAATGCAATTCTTCTGCCACATGCTTGAACATGGTGTCAGGCCAAGCAGTTATGTGGCTGCTAGTTTGGTTACCGCGTGTGATAGGTCAGGGTGCATGACTGAAGGGGCATTTCAGGTTCATGCCCATGTGATCAAATGCGGTTTGGCATGTGATGTATTTGTTGGGACGAGTTTGCTTCACTTTTATGGTACGTTTGGTTGGGTTGCTGAGGTTGACATGGTCTTTAAGGAGATTGAGGAACCTAATATAGTGTCTTGGACTTCTTTGATGGTTGGTTATGCTTATAATGGGTGTGTAAAGGAGGTTATGAGTGTTTATCGGCGTTTGAGGCGTGATGGGGTGTACTGTAATGAAAATGCAATGGCTACGGTTATTAGGTCTTGTGGGGTGCTTGTAGATAAAATGTTGGGTTATCAGGTGCTTGGTAGTGTGATCAAATCTGGATTGGATACTACTGTGTCTGTGGCAAACTCCCTTATTTCCATGTTTGGTAATTGTGATAGCATAGAGGAGGCATCTTGTGTGTTTGATGACATGAAGGAACGTGACACTATTTCGTGGAATTCAATAATTACTGCAAGTGTACATAATGGTCATTGTGAAAAATCTCTAGAATACTTTTCTCAGATGCGTTATACTCATGCAAAAACAGATTATATTACTATTTCAGCCTTGTTACCAGTGTGTGGCTCTGCTCAAAATTTGAGGTGGGGAAGAGGGCTTCATGGTATGGTAGTAAAATCTGGACTGGAATCAAATGTCTGTGTGTGCAATAGTCTCCTAAGTATGTATTCTCAGGCTGGAAAATCTGAGGATGCAGAGTTTGTATTTCATAAAATGCGAGAGAGAGATTTGATTTCATGGAATTCCATGATGGCAAGCCATGTTGACAATGGAAATTATCCACGTGCCTTAGAACTTTTGATTGAGATGCTTCAAACAAGAAAGGCGACAAACTATATTGTTCATGCCTTTGTGATTCTTCTTGGTCTCCATCACAATTTGATCATAGGTAATGCATTGGTTACCATGGTGTGCAAAATTATGCCTGACAGAGATGAAGTGACTTGGAATGCACTAATAGGTGGACATGCTGATAACAAAGAACCTAATGCAGCGATTGAAGCCTTCAATTTGTTGAGAGAAGAAGGTGTGCCTGTAAACTACATTACTATTGTTAATCTTCTCACTCATGCCATTATCGGTAACTTAACTCTACTGGATGAAGGTCAGCAGCTTCATAGCTTGATTATTAAACATGGGTTTGAGTCAAATGATTATGTTTTAAATGCAACAATGGATATGTATGGAAAATGTGGTGAAATTGATGATGTGTTTAGAATCCTTCCCCAACCAAGAAGCAGGTCACAGAGGTCTTGGAACATTTTAATATCGGCATTAGCCAGGCATGGTTTTTTCCAGCAGGCTAGGGAAGCTTTTCATGAGATGCTTGATCTGGGACTGAGACCAGACCATGTCACTTTTGTTTCACTTTTGTCTGCATGCAGCCATGGGGGTTTGGTGGACGAGGGTCTTGCATACTTCTCTTCAATGTCTACCAAATTTGGTGTCCCCACCGGAATAGAACATTGTGTATGCATAATTGACCTTCTTGGGAGAGCAGGAAAGCTTACCGAGGCTGAAAATTTCATTAATAAGATGCCAGTTCCACCAACTGACCTCGTCTGGCGTAGCCTGTTGGCTGCTTGTAAAATACATGGCAATTTGGAGCTTGCGAGGAAAGCTGCTGACCGTCTTTTCGAGCTGGACTCATCCGATGATTCGGCCTATGTTCTTTATTCAAATGTCTGTGCATCAACCCGAAGGTGGAGAGATGTGGAGAATGTGAGAAAGCAAATGGAATCACACAATATAAAGAAGAAACCTGCCTGTAGTTGGGTCAAGTTGAAAAACCAGGTTACTACTTTTGGAATGGGAGACCAGTATCATCCACAAAATGCAGAAATCTATGCAAAGTTGGAAGAGCTCAAAAAGATTATCAGAGAGGCAGGCTATATGCCCGACACAAGCTATTCATTGCAAGATACAGACGAAGAACAAAAGGAGCATAATCTTTGGAACCATAGTGAGAGAATTGCTCTTGCATTTGGGTTGATCAATAGCTCAGAAGGTTCACCTCTTAGAATATTTAAAAATCTCCGTGTCTGTGGTGATTGCCACTCTGTTTTCAAGATGGTTAGTCAAATAATTGGCAGGAAAATCATATTAAGGGATGCATACCGGTTTCACCATTTCAGTAGTGGCAAGTGTTCCTGTTCGGACTATTGGTGA
Predicted protein sequences of Glyma12g22290
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma12g22290.2 sequence type=predicted peptide gene model=Glyma12g22290 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MYSKFGSIEHAQHVFDKMPERNEASWNNLMSGFVRVGWYQKAMQFFCHMLEHGVRPSSYVAASLVTACDRSGCMTEGAFQVHAHVIKCGLACDVFVGTSLLHFYGTFGWVAEVDMVFKEIEEPNIVSWTSLMVGYAYNGCVKEVMSVYRRLRRDGVYCNENAMATVIRSCGVLVDKMLGYQVLGSVIKSGLDTTVSVANSLISMFGNCDSIEEASCVFDDMKERDTISWNSIITASVHNGHCEKSLEYFSQMRYTHAKTDYITISALLPVCGSAQNLRWGRGLHGMVVKSGLESNVCVCNSLLSMYSQAGKSEDAEFVFHKMRERDLISWNSMMASHVDNGNYPRALELLIEMLQTRKATNYIVHAFVILLGLHHNLIIGNALVTMVCKIMPDRDEVTWNALIGGHADNKEPNAAIEAFNLLREEGVPVNYITIVNLLTHAIIGNLTLLDEGQQLHSLIIKHGFESNDYVLNATMDMYGKCGEIDDVFRILPQPRSRSQRSWNILISALARHGFFQQAREAFHEMLDLGLRPDHVTFVSLLSACSHGGLVDEGLAYFSSMSTKFGVPTGIEHCVCIIDLLGRAGKLTEAENFINKMPVPPTDLVWRSLLAACKIHGNLELARKAADRLFELDSSDDSAYVLYSNVCASTRRWRDVENVRKQMESHNIKKKPACSWVKLKNQVTTFGMGDQYHPQNAEIYAKLEELKKIIREAGYMPDTSYSLQDTDEEQKEHNLWNHSERIALAFGLINSSEGSPLRIFKNLRVCGDCHSVFKMVSQIIGRKIILRDAYRFHHFSSGKCSCSDYW*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
