SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G20900 | AT | Annotation by Michelle Graham. TAIR10: diacylglycerol kinase 5 | chr2:8989794-8992798 REVERSE LENGTH=491 | SoyBase | E_val: 0 | ISS |
| GO:0007205 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein kinase C-activating G-protein coupled receptor signaling pathway | SoyBase | N/A | ISS |
| GO:0009723 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to ethylene stimulus | SoyBase | N/A | ISS |
| GO:0004143 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: diacylglycerol kinase activity | SoyBase | N/A | ISS |
| PTHR11255 | Panther | DIACYLGLYCEROL KINASE | JGI | ISS | |
| PTHR11255:SF1 | Panther | MYOSIN HEAVY CHAIN KINASDE | JGI | ISS | |
| PF00609 | PFAM | Diacylglycerol kinase accessory domain | JGI | ISS | |
| PF00781 | PFAM | Diacylglycerol kinase catalytic domain | JGI | ISS | |
| UniRef100_B9SIF7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Diacylglycerol kinase, alpha, putative n=1 Tax=Ricinus communis RepID=B9SIF7_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1LSZ4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1LSZ4_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma12g22280 not represented in the dataset |
Glyma12g22280 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma06g39760 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.12g146700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma12g22280.2 sequence type=transcript gene model=Glyma12g22280 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CATGTTGCCTGATACCTGTTCGCACTACGGGCGCAAGGCCCTGTTTGGAACTCCGAATAAATTAGCTTTTTTTTCCAGCTTTTGCCGAATCCGATTCTGTGGACGATTAAACTGAAAACAATTGAATGCGTTAATGTTTCGCGGTGCTTTTTGTTTCTTGTTAGAAAGTTAACTCTCTTTTGTTATGCTTATAATTTAGCTTCGTTGTTGTTGTTATTATGTTCGCCGAAGTTGGTTGAAAGTTCAAAACGGCGTAACTAAAGGACACGCGTAACGAACTTGCGCGTTGTTCGAGGAAAATGGTGGCGAGAGATTGCAAAGGTTTTCGTTTCCTCGTTAGGAGTTGGGAAATAGCAATGGGGGATGGTAACTATGATAGAACTTTGAGGGAGTTCTGTATTCCGGATTACATATTAGTGCCGGGATCTGAGGTGAGAAGTGTTTCACATGTACCTGCTTGCCCTGTGATTGTTTTCATAAACACCAAAAGTGGTGGCCAGCTTGGAGGGGAGCTTCTTGTTTCCTATAGTACACTTCTTAACAGAAACCAGGTTTTTGAGTTGGGGAAAAATGCTCCGGATAAGGTTCTGCAGAAGCTTTATGCTACATTGGAAACACTCAAGCACAATGGAGATAATTTTGCAGCTGAAATTCAGAATAGGTTGAGAATAATTGTTGCAGGTGGAGATGGTACTGCCAGCTGGCTTCTAGGAGTTGTATCTGACCTTAAATTACCTCAACCGCCACCAATTGCTACTGTGCCATTGGGGACGGGAAATAATCTTCCCTTTGCGTTTGGATGGGGAAAGAAAAATCCAACCACGGATCTCCAATCAGTGGAGACATTCCTAAATCATGTAAAAGCGGCAAAGGAAATGAAAATAGACAGTTGGCATATTATAATGAGAATGAAGGCTCCAAAAGAAGGTTCATGTGACCCTATTGCACCCCTTGAGCTGCCTCATGCTATGCATACATTTAATCGTGTCTCTTCAACAGATAAACTAAACTTGAAAGGTTACCACACTTACCGTGGGGGATTTTGGAACTACTTTAGCATGGGAATGGATGCTCAAGTATCTTATGCATTTCATTCTGAGAGGAAATTACATCCAGAAAAGTTTAAAAATCAGTTATACAATCAGAGTGCCTATCTGAAGCTTGGATGTACACAAGGATGGTTTTTTGGTTCTCTGTTTCAATCTTCTTTGCGGAATATTGCTCAGTTGGCAAAGGTTAAGATAATGAAAAAAGGTCAATGGGAAGATCTCCACATACCTCGCAGTATAAAGTCAATAGTTTGCCTCAACTTGCCTAGCTTTTCTGGTGGACTCAATCCCTGGGGAACACCAAATAGGAAGAAATCAATTTATAGGGACCTGACTCTTCCCTATGTGGACGATGGCCTATTTGAGGTAGTTGGTTTTAGAGATGCTTGGCATGGTCTTGTTTTGCTTGCACCAAAGGGACACGGAACTCGTTTGGCACAGACAAGCAGAATCCGTTTTGAGTTTCACAAGGGTGCAGCTGACTGCACATTCATGAGAATTGATGGAGAGCCATGGAAACAACCCCTCCCAAAAGATGATGACGCAGTTGTAGTTGAGATATCACACCATGATCAAGTTAGCATGCTTGCAACCCCATTGTGCCGTTCTAAAAGTATTTATGATCCCTCCTCACCTTCCGATGACCGCGAAGAAGATGATAGCAGTGAAGAAGAACCATCAGAAGATTGGGAAGAACGGCGCAAATTTGGCGCAGCTGAGACATTCAAATATCCTGATGGAATTGATATAGCTCAAGTAAGTTAGTGTACAGAGAGGAGTAGCATTGCTCAGTGTTTGGTGGTACAAAGGCAAGTAGTAGGGTATAAAATGAAAGGGTAGGAGTAAAATTCTTTTCTTGTTTGGTGCAAATAATTTTCCTTACTCGTACGTGTAATGTACAGAGGACTTCCGAGGAAATTAACCAAGATTAATGACTAGTGATTAATGTAATGAACCTTGGATAGGGTTATTGTTTGTTGTCTTACTTCTAGTTGCAAAATTTATTCTTTCATTTCAATGTCAAGCGTCTATGATGGAGAGTTGGAGCTGGAGATATTGCATGTGTAATACTCTT
>Glyma12g22280.1 sequence type=CDS gene model=Glyma12g22280 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGGGATGGTAACTATGATAGAACTTTGAGGGAGTTCTGTATTCCGGATTACATATTAGTGCCGGGATCTGAGGTGAGAAGTGTTTCACATGTACCTGCTTGCCCTGTGATTGTTTTCATAAACACCAAAAGTGGTGGCCAGCTTGGAGGGGAGCTTCTTGTTTCCTATAGTACACTTCTTAACAGAAACCAGGTTTTTGAGTTGGGGAAAAATGCTCCGGATAAGGTTCTGCAGAAGCTTTATGCTACATTGGAAACACTCAAGCACAATGGAGATAATTTTGCAGCTGAAATTCAGAATAGGTTGAGAATAATTGTTGCAGGTGGAGATGGTACTGCCAGCTGGCTTCTAGGAGTTGTATCTGACCTTAAATTACCTCAACCGCCACCAATTGCTACTGTGCCATTGGGGACGGGAAATAATCTTCCCTTTGCGTTTGGATGGGGAAAGAAAAATCCAACCACGGATCTCCAATCAGTGGAGACATTCCTAAATCATGTAAAAGCGGCAAAGGAAATGAAAATAGACAGTTGGCATATTATAATGAGAATGAAGGCTCCAAAAGAAGGTTCATGTGACCCTATTGCACCCCTTGAGCTGCCTCATGCTATGCATACATTTAATCGTGTCTCTTCAACAGATAAACTAAACTTGAAAGGTTACCACACTTACCGTGGGGGATTTTGGAACTACTTTAGCATGGGAATGGATGCTCAAGTATCTTATGCATTTCATTCTGAGAGGAAATTACATCCAGAAAAGTTTAAAAATCAGTTATACAATCAGAGTGCCTATCTGAAGCTTGGATGTACACAAGGATGGTTTTTTGGTTCTCTGTTTCAATCTTCTTTGCGGAATATTGCTCAGTTGGCAAAGGTTAAGATAATGAAAAAAGGTCAATGGGAAGATCTCCACATACCTCGCAGTATAAAGTCAATAGTTTGCCTCAACTTGCCTAGCTTTTCTGGTGGACTCAATCCCTGGGGAACACCAAATAGGAAGAAATCAATTTATAGGGACCTGACTCTTCCCTATGTGGACGATGGCCTATTTGAGGTAGTTGGTTTTAGAGATGCTTGGCATGGTCTTGTTTTGCTTGCACCAAAGGGACACGGAACTCGTTTGGCACAGACAAGCAGAATCCGTTTTGAGTTTCACAAGGGTGCAGCTGACTGCACATTCATGAGAATTGATGGAGAGCCATGGAAACAACCCCTCCCAAAAGATGATGACGCAGTTGTAGTTGAGATATCACACCATGATCAAGTTAGCATGCTTGCAACCCCATTGTGCCGTTCTAAAAGTATTTATGATCCCTCCTCACCTTCCGATGACCGCGAAGAAGATGATAGCAGTGAAGAAGAACCATCAGAAGATTGGGAAGAACGGCGCAAATTTGGCGCAGCTGAGACATTCAAATATCCTGATGGAATTGATATAGCTCAAGTAAGTTAG >Glyma12g22280.2 sequence type=CDS gene model=Glyma12g22280 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTGGCGAGAGATTGCAAAGGTTTTCGTTTCCTCGTTAGGAGTTGGGAAATAGCAATGGGGGATGGTAACTATGATAGAACTTTGAGGGAGTTCTGTATTCCGGATTACATATTAGTGCCGGGATCTGAGGTGAGAAGTGTTTCACATGTACCTGCTTGCCCTGTGATTGTTTTCATAAACACCAAAAGTGGTGGCCAGCTTGGAGGGGAGCTTCTTGTTTCCTATAGTACACTTCTTAACAGAAACCAGGTTTTTGAGTTGGGGAAAAATGCTCCGGATAAGGTTCTGCAGAAGCTTTATGCTACATTGGAAACACTCAAGCACAATGGAGATAATTTTGCAGCTGAAATTCAGAATAGGTTGAGAATAATTGTTGCAGGTGGAGATGGTACTGCCAGCTGGCTTCTAGGAGTTGTATCTGACCTTAAATTACCTCAACCGCCACCAATTGCTACTGTGCCATTGGGGACGGGAAATAATCTTCCCTTTGCGTTTGGATGGGGAAAGAAAAATCCAACCACGGATCTCCAATCAGTGGAGACATTCCTAAATCATGTAAAAGCGGCAAAGGAAATGAAAATAGACAGTTGGCATATTATAATGAGAATGAAGGCTCCAAAAGAAGGTTCATGTGACCCTATTGCACCCCTTGAGCTGCCTCATGCTATGCATACATTTAATCGTGTCTCTTCAACAGATAAACTAAACTTGAAAGGTTACCACACTTACCGTGGGGGATTTTGGAACTACTTTAGCATGGGAATGGATGCTCAAGTATCTTATGCATTTCATTCTGAGAGGAAATTACATCCAGAAAAGTTTAAAAATCAGTTATACAATCAGAGTGCCTATCTGAAGCTTGGATGTACACAAGGATGGTTTTTTGGTTCTCTGTTTCAATCTTCTTTGCGGAATATTGCTCAGTTGGCAAAGGTTAAGATAATGAAAAAAGGTCAATGGGAAGATCTCCACATACCTCGCAGTATAAAGTCAATAGTTTGCCTCAACTTGCCTAGCTTTTCTGGTGGACTCAATCCCTGGGGAACACCAAATAGGAAGAAATCAATTTATAGGGACCTGACTCTTCCCTATGTGGACGATGGCCTATTTGAGGTAGTTGGTTTTAGAGATGCTTGGCATGGTCTTGTTTTGCTTGCACCAAAGGGACACGGAACTCGTTTGGCACAGACAAGCAGAATCCGTTTTGAGTTTCACAAGGGTGCAGCTGACTGCACATTCATGAGAATTGATGGAGAGCCATGGAAACAACCCCTCCCAAAAGATGATGACGCAGTTGTAGTTGAGATATCACACCATGATCAAGTTAGCATGCTTGCAACCCCATTGTGCCGTTCTAAAAGTATTTATGATCCCTCCTCACCTTCCGATGACCGCGAAGAAGATGATAGCAGTGAAGAAGAACCATCAGAAGATTGGGAAGAACGGCGCAAATTTGGCGCAGCTGAGACATTCAAATATCCTGATGGAATTGATATAGCTCAAGTAAGTTAG
>Glyma12g22280.1 sequence type=predicted peptide gene model=Glyma12g22280 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGDGNYDRTLREFCIPDYILVPGSEVRSVSHVPACPVIVFINTKSGGQLGGELLVSYSTLLNRNQVFELGKNAPDKVLQKLYATLETLKHNGDNFAAEIQNRLRIIVAGGDGTASWLLGVVSDLKLPQPPPIATVPLGTGNNLPFAFGWGKKNPTTDLQSVETFLNHVKAAKEMKIDSWHIIMRMKAPKEGSCDPIAPLELPHAMHTFNRVSSTDKLNLKGYHTYRGGFWNYFSMGMDAQVSYAFHSERKLHPEKFKNQLYNQSAYLKLGCTQGWFFGSLFQSSLRNIAQLAKVKIMKKGQWEDLHIPRSIKSIVCLNLPSFSGGLNPWGTPNRKKSIYRDLTLPYVDDGLFEVVGFRDAWHGLVLLAPKGHGTRLAQTSRIRFEFHKGAADCTFMRIDGEPWKQPLPKDDDAVVVEISHHDQVSMLATPLCRSKSIYDPSSPSDDREEDDSSEEEPSEDWEERRKFGAAETFKYPDGIDIAQVS* >Glyma12g22280.2 sequence type=predicted peptide gene model=Glyma12g22280 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVARDCKGFRFLVRSWEIAMGDGNYDRTLREFCIPDYILVPGSEVRSVSHVPACPVIVFINTKSGGQLGGELLVSYSTLLNRNQVFELGKNAPDKVLQKLYATLETLKHNGDNFAAEIQNRLRIIVAGGDGTASWLLGVVSDLKLPQPPPIATVPLGTGNNLPFAFGWGKKNPTTDLQSVETFLNHVKAAKEMKIDSWHIIMRMKAPKEGSCDPIAPLELPHAMHTFNRVSSTDKLNLKGYHTYRGGFWNYFSMGMDAQVSYAFHSERKLHPEKFKNQLYNQSAYLKLGCTQGWFFGSLFQSSLRNIAQLAKVKIMKKGQWEDLHIPRSIKSIVCLNLPSFSGGLNPWGTPNRKKSIYRDLTLPYVDDGLFEVVGFRDAWHGLVLLAPKGHGTRLAQTSRIRFEFHKGAADCTFMRIDGEPWKQPLPKDDDAVVVEISHHDQVSMLATPLCRSKSIYDPSSPSDDREEDDSSEEEPSEDWEERRKFGAAETFKYPDGIDIAQVS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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