Glyma12g20220 - SoyBase

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Report for Sequence Feature Glyma12g20220

Feature Type:	gene_model
Chromosome:	Gm12
Start:	21319199
stop:	21324717
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g20220

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G54080	AT	Annotation by Michelle Graham. TAIR10: homogentisate 1,2-dioxygenase \| chr5:21945920-21948070 FORWARD LENGTH=461	SoyBase	E_val: 0	ISS
GO:0006559	GO-bp	Annotation by Michelle Graham. GO Biological Process: L-phenylalanine catabolic process	SoyBase	N/A	ISS
GO:0006570	GO-bp	Annotation by Michelle Graham. GO Biological Process: tyrosine metabolic process	SoyBase	N/A	ISS
GO:0006572	GO-bp	Annotation by Michelle Graham. GO Biological Process: tyrosine catabolic process	SoyBase	N/A	ISS
GO:0006635	GO-bp	Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation	SoyBase	N/A	ISS
GO:0009744	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to sucrose stimulus	SoyBase	N/A	ISS
GO:0009750	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to fructose stimulus	SoyBase	N/A	ISS
GO:0015996	GO-bp	Annotation by Michelle Graham. GO Biological Process: chlorophyll catabolic process	SoyBase	N/A	ISS
GO:0016558	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein import into peroxisome matrix	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0004411	GO-mf	Annotation by Michelle Graham. GO Molecular Function: homogentisate 1,2-dioxygenase activity	SoyBase	N/A	ISS
KOG1417	KOG	Homogentisate 1,2-dioxygenase	JGI		ISS
PTHR11056	Panther	HOMOGENTISATE 1,2-DIOXYGENASE	JGI		ISS
PF04209	PFAM	homogentisate 1,2-dioxygenase	JGI		ISS
UniRef100_B9RXB8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Homogentisate 1,2-dioxygenase, putative n=1 Tax=Ricinus communis RepID=B9RXB8_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1LSW3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LSW3_SOYBN	SoyBase	E_val: 0	ISS

Proteins Associated with Glyma12g20220

Locus	Gene Symbol	Protein Name
	HGO	HOMOGENTISATE 1,2-DIOXYGENASE

Expression Patterns of Glyma12g20220

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma12g20220 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g158600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g20220

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma12g20220

Limit To All Plant Sequences

>Glyma12g20220.1   sequence type=CDS   gene model=Glyma12g20220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGAACCCAATCGACGGTGGCGAGTTCGTGTACCTTTCCGGGTTCGGCAACCACTTCTCCTCCGAGGCCCTCGCCGGAGCTCTGCCGGTGGCGCAGAACAGCCCCCTCGTCTGCCCGTACGGCCTCTACGCCGAGCAAATCTCTGGCACCTCCTTCACCTCCCCTCGCAACCGCAACCTCTTCAGTTGGTTTTATCGGATCAAGCCATCGGTGACTCACGAACCGTTCAAGCCTAGGGTACCTGGTAATGGCAGAATTTTGAGTGAGTTTAACAACTCCAACAGTTCTGCTAACCCAACTCAGCTTAGATGGAAGCCCTTGGATGCGCCCGATTCGCCAACAGATTTCATTGATGGGTTGTCCACTGTGTGTGGTTCTGGCAGCTCCTTCATGCGCCACGGATATGCTATTCACATGTACACTGCCAACAAATCAATGGACAATTGTGCCTTTTGCAATGCTGATGGTGACTTCTTGATAGTTCCCCAACAAGGAAGACTCCTTGTCACTACTGAATGTGGAAGGTTGAAAGTTTCTCCAGGTGAAATTGCTATATTACCTCAAGGCTTTCGTTTTTCTGTGAATCTTCCTGATGGTCCATCCCGTGGTTATGTTGCTGAAATTTTTGGTACTCATTTTCAACTTCCTGATCTGGGACCAATAGGTGCTAATGGCCTTGCTTCCCCTAGGGATTTCCTTGTTCCCACTGCTTGGTTTGAAGATAAATCTTATCCTGGGTACACCATAGTGCAGAAATTTGGTGGTGAGCTCTTTGATGCAGTACAAGATTTCTCTCCTTTCAATGTTGTTGCTTGGCATGGTAATTATGTTCCATATATGTATGATTTAAACAAATTCTGCCCTTATAATACAGTTCTGTTTGATCATAGTGATCCATCAATCAATACTGTGTTGACAGCACCAACTGATAAACCTGGAGTGGCATTGCTTGATTTTGTCATTTTCCCACCCAGATGGCTGGTTGCTGAGCATACTTTCCGGCCTCCATATTATCATCGCAATTGCATGAGTGAATTTATGGGCCTCATTCATGGTGGTTATGAGGCCAAGGCTGATGGATTTCTTCCCGGTGGTGCAAGTCTCCATAGTTGTATGACTCCCCATGGTCCTGATACCAAGTCATATGAGGCTACCATTGCACGAGGAAATGATGTAGGACCTTGCAAGATCACTGACACAATGGCTTTTATGTTTGAATCGAGTTTGATACCCCGTATCAGTCAATGGGCCTCAGAATCACCGTTCTTGGACCAAGATTATTACCAGTGTTGGATTGGCCTGAAATCTCATTTTGCAGTTACTAAGACGTCTCCTGAAAACCCAAGCTTGGGAAATGGAGATTGA

Predicted protein sequences of Glyma12g20220

Limit To All Plant Sequences

>Glyma12g20220.1   sequence type=predicted peptide   gene model=Glyma12g20220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MENPIDGGEFVYLSGFGNHFSSEALAGALPVAQNSPLVCPYGLYAEQISGTSFTSPRNRNLFSWFYRIKPSVTHEPFKPRVPGNGRILSEFNNSNSSANPTQLRWKPLDAPDSPTDFIDGLSTVCGSGSSFMRHGYAIHMYTANKSMDNCAFCNADGDFLIVPQQGRLLVTTECGRLKVSPGEIAILPQGFRFSVNLPDGPSRGYVAEIFGTHFQLPDLGPIGANGLASPRDFLVPTAWFEDKSYPGYTIVQKFGGELFDAVQDFSPFNVVAWHGNYVPYMYDLNKFCPYNTVLFDHSDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIHGGYEAKADGFLPGGASLHSCMTPHGPDTKSYEATIARGNDVGPCKITDTMAFMFESSLIPRISQWASESPFLDQDYYQCWIGLKSHFAVTKTSPENPSLGNGD*

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