Glyma12g20201 - SoyBase

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Report for Sequence Feature Glyma12g20201

Feature Type:	gene_model
Chromosome:	Gm12
Start:	21288474
stop:	21293339
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g20201

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
PF01107	PFAM	Viral movement protein (MP)	JGI		ISS
UniRef100_I1NDT0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1NDT0_SOYBN	SoyBase	E_val: 1.00E-158	ISS
UniRef100_Q8H6Q8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: CTV.20 n=1 Tax=Citrus trifoliata RepID=Q8H6Q8_PONTR	SoyBase	E_val: 2.00E-45	ISS

Expression Patterns of Glyma12g20201

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma12g20201 not represented in the dataset	Glyma12g20201 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma12g20201 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g158700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g20201

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma12g20201

Limit To All Plant Sequences

>Glyma12g20201.1   sequence type=CDS   gene model=Glyma12g20201   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGTCTTAGAGACATTAGGCACAACAAATGTGAGGATTCTTTAATAGGGACAATAGAAACTAGCCTAGGACAAGGACCAGTCTATTTCAATTGTTATCCAAACAAAACGATGAGTCTGATGGATCGAAACATCCTTGACTCTTTATTCCTTAACATCCACTTTTACGGCCTAGACATGAAGGAGGGTTCAATTCCAGCAGCCTTGATTTACAGAATCCAGTATAAGGTCATGAACACTTGTGCATCAAGAGTTCTTCTCAAACCACAAAAAGGAGAGACGACTTTGTTGGATCGAGGAATGGGAAGAATCAAAAGAATTCTCAGACTGTGTCGTTTTGAATTCTTTGACAAGGGAGAAGGGAGACACAAAAGAATTCAGGCGACTTTGTTTTTCATTGATATTACAAAGGCTAATGTTTCTCTCCCCAAAACTATAAAATGGGATGAGGTAACTCTTCCCGAAAAGTGGGTCACGGATAAGGCTACACCTTCAATCTCCGGACCTACCCCTACCATAGAGCAAAGAAAACAAGATAATTCTGGTAAGATCAAAGATGATGAGTTAATCCAATCGGAATTACCTCCCACAACTCAATACCAACTGCCAAAGGTCAAGGACAGCAGTGATAAACCTATCATGGCCACACCATTTAAGACAAAGGATGTCAACAAAGAAATAACCCCGAAGGATATTAGGAGCCTAACGGAACAAGCTAATTACACAACAAATACCTTCAGCAAAAAAGCCAAACAGAAATTCAGGAAACTTAGAAAACAAAAATCCCCTACTGAGGAGGTAGGTGATAGAAATAGTGAATTATTAAGCAAGATTAATAGTTTACTTAAAACCATCCCTGAAACCCCTCAACCTTCAGAGGAATCATCCAAAATAAGGACTAGACACACCTCCAAACTAATCAATGCCATTAACAAGGATAGTGACAATAATTCAGAACAAGTATCCAAAGAAGGTTCAATGTTTGAAAAGGTAATCAATCCGATTAACACCAAACATTGGAAAACACCTTCCAAACTTTATTACCAAAGACCAACTGACCCTGATCTTCTACTAGAGGAAAGAGGCGAAAATAACTTTAAAATCATTACAAATGACGATAATGAAGAGATCCCTGACACTGTCAATACCCTTATTTTTACAATAGTCCAACATTTTATTGGTGACTCATCACTTTGGAAAGATAGGTCAGCAAAATTATTATCCAATCTTAAAGTATACACTAGAGAGGATAGCCAACAACCTTTTTGGAAAGAAAATTTTCTAGTCGGTCTTCCAAGATCATTAGGAGATAAGGTTAGAGACAAAATCCACAACCGATCCACTAATGGGGATATTCCATATGATAACTTGAGTTATGGACAACTCATTTCTTATGTCCAAAAGGTGGCCCTAAAAATTTGTCAGGATGACAAAATCCAGAGGCAATTGGCCAAAGAAAAATCTCTGAATAAGAGAGACTTAGGATCTTTCTGTGAACAATTTGGGTTGTCGGCCTGCCCAAAGCAAATGAAAAAACAAAACCCCAAAATGGAGTTTCAAAAGAAACATGCCTCTAAAAGAAGATTTTTAGGTAAAAAATACTCAGATAAATCTTCAACCAATAAAGAAATCAATGTTCCAAAATCCAAAACCAAAGTAGTTTGCTATAACTGCGAAAAACAAGGCCACATAAGCAAATATTGCAAATTAAAAAGGAAACTAAGAAACCTTAGTTTAGATCCATCCATAGAAGAACAAATTAATAATCTACTTATTGAAACCTCAAAAGAAGAAACTGGGGAAGTATCTTCAGAGGAAAATCTCAACCAAATCCAACAGGATGATAGAACATCATCCTCGGAAGAAGAAGATACCCAAGAAATTAATACTCTGACAAAAGAACAAGATATTTTGTTTGAAGCAATAAATTCCATTCAAGACCCTCTGGAAAATAATATTTTCTTGAATAAACTTAAAAAATCTTTGGAAAATAAACCTAAACCAAAAGAATTTATTACTAACAACAAATTTGATGTTAAAATTAACAACCTTAAACAAGAAGTTAAAGAACTCAGTGATTCGGATAATGAGGTCAAAGAAGAAGATGAATGTCAAGATGATGAAATATTCATGGGATTGATCAACAAGATTAAAATCCAGAAGTGTTATATTAATGTTAGAATTATTATCAATGATTTTGTTCTAGATACAATGGCCCTATTTGACACAGGGGCTGACTCGAACTGTATTCTAGGAGGACTAATTCCTACCAATTTTTTTGAGGAAACCTCGAAGAAATTAAGCACAACAAGTGGGTCAAAATAA

Predicted protein sequences of Glyma12g20201

Limit To All Plant Sequences

>Glyma12g20201.1   sequence type=predicted peptide   gene model=Glyma12g20201   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MCLRDIRHNKCEDSLIGTIETSLGQGPVYFNCYPNKTMSLMDRNILDSLFLNIHFYGLDMKEGSIPAALIYRIQYKVMNTCASRVLLKPQKGETTLLDRGMGRIKRILRLCRFEFFDKGEGRHKRIQATLFFIDITKANVSLPKTIKWDEVTLPEKWVTDKATPSISGPTPTIEQRKQDNSGKIKDDELIQSELPPTTQYQLPKVKDSSDKPIMATPFKTKDVNKEITPKDIRSLTEQANYTTNTFSKKAKQKFRKLRKQKSPTEEVGDRNSELLSKINSLLKTIPETPQPSEESSKIRTRHTSKLINAINKDSDNNSEQVSKEGSMFEKVINPINTKHWKTPSKLYYQRPTDPDLLLEERGENNFKIITNDDNEEIPDTVNTLIFTIVQHFIGDSSLWKDRSAKLLSNLKVYTREDSQQPFWKENFLVGLPRSLGDKVRDKIHNRSTNGDIPYDNLSYGQLISYVQKVALKICQDDKIQRQLAKEKSLNKRDLGSFCEQFGLSACPKQMKKQNPKMEFQKKHASKRRFLGKKYSDKSSTNKEINVPKSKTKVVCYNCEKQGHISKYCKLKRKLRNLSLDPSIEEQINNLLIETSKEETGEVSSEENLNQIQQDDRTSSSEEEDTQEINTLTKEQDILFEAINSIQDPLENNIFLNKLKKSLENKPKPKEFITNNKFDVKINNLKQEVKELSDSDNEVKEEDECQDDEIFMGLINKIKIQKCYINVRIIINDFVLDTMALFDTGADSNCILGGLIPTNFFEETSKKLSTTSGSK*

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