Glyma12g20180 - SoyBase

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Report for Sequence Feature Glyma12g20180

Feature Type:	gene_model
Chromosome:	Gm12
Start:	21213898
stop:	21219439
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g20180

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G22140	AT	Annotation by Michelle Graham. TAIR10: PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein \| chr4:11728093-11730230 REVERSE LENGTH=224	SoyBase	E_val: 1.00E-139	ISS
GO:0006333	GO-bp	Annotation by Michelle Graham. GO Biological Process: chromatin assembly or disassembly	SoyBase	N/A	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009845	GO-bp	Annotation by Michelle Graham. GO Biological Process: seed germination	SoyBase	N/A	ISS
GO:0009911	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of flower development	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
PTHR12505	Panther	PHD FINGER TRANSCRIPTION FACTOR	JGI		ISS
PTHR12505:SF8	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00628	PFAM	PHD-finger	JGI		ISS
PF01426	PFAM	BAH domain	JGI		ISS
UniRef100_I1LSW2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LSW2_SOYBN	SoyBase	E_val: 2.00E-160	ISS
UniRef100_Q56W44	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: PHD finger and bromo-adjacent homology domain-containing protein n=1 Tax=Arabidopsis thaliana RepID=Q56W44_ARATH	SoyBase	E_val: 6.00E-137	ISS

Expression Patterns of Glyma12g20180

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma12g20180 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g158800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g20180

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma12g20180

Limit To All Plant Sequences

>Glyma12g20180.2   sequence type=transcript   gene model=Glyma12g20180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACTTCTTAAGTAGATAACATTAGATATCACATGATGAAGCAAATTAGGAAACTGCTTAGCGGAGATCTCAGGACCAAAAAATTTACTACGAAACGGTCAAATGTAGTGAACCCTCCAAGAATCCCATAGCATTCCCAAAAAATCACTGATAAAATCGCAGGCGAAGCGTCACAGTCACTCCCTCTCCTCACACGAAAAAAGTATCCCCCCAACCCACCCCACCCCACCCCCAACCCTCAACTTAGGGTTCTTCTGTTCTTCTTCTTCTTCTCCTTTAACCAAACAACAAGAAAAAAAAATCACATTCCCCAAAACACCCTTCTCGCTCCGCATGGCGAAAACGAGGCCAGGCAGAAAGGACGTGGACTCGTACACCATAAGAGGAACCAGCAAGATCGTCCGAGCTGGAGACTGTGTTCTGATGCGGCCCTCGGACACGTCGAAGCCGCCTTACGTGGCGCGCGTGGAGAAGATCGAGCAGGACAACAGGAGCAACGTGAAGGTGCGTGTGAGGTGGTACTACCGGCCAGAAGAGTCGATTGGTGGTCGGAGACAGTTCCACGGGGCTAAGGAACTGTTCCTCTCCGACCACTACGATGTGCAAAGTGCACACACCATTGAGGGCAAGTGTGTTGTGCACTCTTTTAAGAACTACACCAAGCTTGAGAATGTGGGTGCTGAGGATTACTATTGTAGATTCGAGTACAAGGCCGCCACCGGGGCTTTCACCCCTGACCGTGTTGCTGTGTATTGCAAATGTGAGATGCCTTATAACCCGGATGATCTCATGGTACAATGTGAAGGGTGCAAGGATTGCACCTGCAGAATGAGCGCCCTAAAGGTGTTAAAGAGTTTTAAAGGTCAATTTTGGTAGTTAAATGAGAAGGGAAATGGTTGAGTTGTGACAACAAGAAGCTCATGGAAAATGTAAGATGTCTCCCATGGTCCAATAATTGTCCTGAAACTAAAAGAACCCTATCTTGACCTATGCAAGGTTTTTGCATGTTAGTCTTGAAAAAGCATTTTACTTGTGCAATAAAAAAAACCTGAGAAGGAGAGAGTGAATTTTATTTAAGGATTCTACTCAGCAAAAAATTCAGCGATGGATGAATTTTATCTCTGGCTGAAAGGGCCATTGTGTTTGTGTGTGGCTGTTGTTATTGTGACTATTGGTTCTGTTGTTTCTGATATCCGATATATGTGTAAGCCAATATAAATTGAATGATGCAGAGGCTTATTCTGTCCATTGATTGGTTTCACAGTGGTGATGAAAATTATACTCAGATATGTTTTTTATATCAATGTTTATGTAATATTG

Coding sequences of Glyma12g20180

Limit To All Plant Sequences

>Glyma12g20180.1   sequence type=CDS   gene model=Glyma12g20180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGAAAACGAGGCCAGGCAGAAAGGACGTGGACTCGTACACCATAAGAGGAACCAGCAAGATCGTCCGAGCTGGAGACTGTGTTCTGATGCGGCCCTCGGACACGTCGAAGCCGCCTTACGTGGCGCGCGTGGAGAAGATCGAGCAGGACAACAGGAGCAACGTGAAGGTGCGTGTGAGGTGGTACTACCGGCCAGAAGAGTCGATTGGTGGTCGGAGACAGTTCCACGGGGCTAAGGAACTGTTCCTCTCCGACCACTACGATGTGCAAAGTGCACACACCATTGAGGGCAAGTGTGTTGTGCACTCTTTTAAGAACTACACCAAGCTTGAGAATGTGGGTGCTGAGGATTACTATTGTAGATTCGAGTACAAGGCCGCCACCGGGGCTTTCACCCCTGACCGTGTTGCTGTGTATTGCAAATGTGAGATGCCTTATAACCCGGATGATCTCATGGTACAATGTGAAGGGTGCAAGGATTGGTACCATCCTGCTTGCATGGGCATGACTATTGAAGAAGCAAAGAAACTAGATCATTTTGTATGTTCTGAATGTTCATCTGATGATGATATGAAGAAACCCCAAGCTACATTTTCTGCATCACTGGGAGCTGATGGCAAGGTGGAGCCAAAGCGGCGGAAGAGATGA

>Glyma12g20180.2   sequence type=CDS   gene model=Glyma12g20180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGAAAACGAGGCCAGGCAGAAAGGACGTGGACTCGTACACCATAAGAGGAACCAGCAAGATCGTCCGAGCTGGAGACTGTGTTCTGATGCGGCCCTCGGACACGTCGAAGCCGCCTTACGTGGCGCGCGTGGAGAAGATCGAGCAGGACAACAGGAGCAACGTGAAGGTGCGTGTGAGGTGGTACTACCGGCCAGAAGAGTCGATTGGTGGTCGGAGACAGTTCCACGGGGCTAAGGAACTGTTCCTCTCCGACCACTACGATGTGCAAAGTGCACACACCATTGAGGGCAAGTGTGTTGTGCACTCTTTTAAGAACTACACCAAGCTTGAGAATGTGGGTGCTGAGGATTACTATTGTAGATTCGAGTACAAGGCCGCCACCGGGGCTTTCACCCCTGACCGTGTTGCTGTGTATTGCAAATGTGAGATGCCTTATAACCCGGATGATCTCATGGTACAATGTGAAGGGTGCAAGGATTGCACCTGCAGAATGAGCGCCCTAAAGGTGTTAAAGAGTTTTAAAGGTCAATTTTGGTAG

Predicted protein sequences of Glyma12g20180

Limit To All Plant Sequences

>Glyma12g20180.1   sequence type=predicted peptide   gene model=Glyma12g20180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAKTRPGRKDVDSYTIRGTSKIVRAGDCVLMRPSDTSKPPYVARVEKIEQDNRSNVKVRVRWYYRPEESIGGRRQFHGAKELFLSDHYDVQSAHTIEGKCVVHSFKNYTKLENVGAEDYYCRFEYKAATGAFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWYHPACMGMTIEEAKKLDHFVCSECSSDDDMKKPQATFSASLGADGKVEPKRRKR*

>Glyma12g20180.2   sequence type=predicted peptide   gene model=Glyma12g20180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAKTRPGRKDVDSYTIRGTSKIVRAGDCVLMRPSDTSKPPYVARVEKIEQDNRSNVKVRVRWYYRPEESIGGRRQFHGAKELFLSDHYDVQSAHTIEGKCVVHSFKNYTKLENVGAEDYYCRFEYKAATGAFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDCTCRMSALKVLKSFKGQFW*

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