SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G22140 | AT | Annotation by Michelle Graham. TAIR10: PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein | chr4:11728093-11730230 REVERSE LENGTH=224 | SoyBase | E_val: 1.00E-139 | ISS |
| GO:0006333 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chromatin assembly or disassembly | SoyBase | N/A | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0009845 | GO-bp | Annotation by Michelle Graham. GO Biological Process: seed germination | SoyBase | N/A | ISS |
| GO:0009911 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of flower development | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| PTHR12505 | Panther | PHD FINGER TRANSCRIPTION FACTOR | JGI | ISS | |
| PTHR12505:SF8 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00628 | PFAM | PHD-finger | JGI | ISS | |
| PF01426 | PFAM | BAH domain | JGI | ISS | |
| UniRef100_I1LSW2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LSW2_SOYBN | SoyBase | E_val: 2.00E-160 | ISS |
| UniRef100_Q56W44 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: PHD finger and bromo-adjacent homology domain-containing protein n=1 Tax=Arabidopsis thaliana RepID=Q56W44_ARATH | SoyBase | E_val: 6.00E-137 | ISS |
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Glyma12g20180 not represented in the dataset |
Glyma12g20180 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.12g158800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma12g20180.2 sequence type=transcript gene model=Glyma12g20180 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ACTTCTTAAGTAGATAACATTAGATATCACATGATGAAGCAAATTAGGAAACTGCTTAGCGGAGATCTCAGGACCAAAAAATTTACTACGAAACGGTCAAATGTAGTGAACCCTCCAAGAATCCCATAGCATTCCCAAAAAATCACTGATAAAATCGCAGGCGAAGCGTCACAGTCACTCCCTCTCCTCACACGAAAAAAGTATCCCCCCAACCCACCCCACCCCACCCCCAACCCTCAACTTAGGGTTCTTCTGTTCTTCTTCTTCTTCTCCTTTAACCAAACAACAAGAAAAAAAAATCACATTCCCCAAAACACCCTTCTCGCTCCGCATGGCGAAAACGAGGCCAGGCAGAAAGGACGTGGACTCGTACACCATAAGAGGAACCAGCAAGATCGTCCGAGCTGGAGACTGTGTTCTGATGCGGCCCTCGGACACGTCGAAGCCGCCTTACGTGGCGCGCGTGGAGAAGATCGAGCAGGACAACAGGAGCAACGTGAAGGTGCGTGTGAGGTGGTACTACCGGCCAGAAGAGTCGATTGGTGGTCGGAGACAGTTCCACGGGGCTAAGGAACTGTTCCTCTCCGACCACTACGATGTGCAAAGTGCACACACCATTGAGGGCAAGTGTGTTGTGCACTCTTTTAAGAACTACACCAAGCTTGAGAATGTGGGTGCTGAGGATTACTATTGTAGATTCGAGTACAAGGCCGCCACCGGGGCTTTCACCCCTGACCGTGTTGCTGTGTATTGCAAATGTGAGATGCCTTATAACCCGGATGATCTCATGGTACAATGTGAAGGGTGCAAGGATTGCACCTGCAGAATGAGCGCCCTAAAGGTGTTAAAGAGTTTTAAAGGTCAATTTTGGTAGTTAAATGAGAAGGGAAATGGTTGAGTTGTGACAACAAGAAGCTCATGGAAAATGTAAGATGTCTCCCATGGTCCAATAATTGTCCTGAAACTAAAAGAACCCTATCTTGACCTATGCAAGGTTTTTGCATGTTAGTCTTGAAAAAGCATTTTACTTGTGCAATAAAAAAAACCTGAGAAGGAGAGAGTGAATTTTATTTAAGGATTCTACTCAGCAAAAAATTCAGCGATGGATGAATTTTATCTCTGGCTGAAAGGGCCATTGTGTTTGTGTGTGGCTGTTGTTATTGTGACTATTGGTTCTGTTGTTTCTGATATCCGATATATGTGTAAGCCAATATAAATTGAATGATGCAGAGGCTTATTCTGTCCATTGATTGGTTTCACAGTGGTGATGAAAATTATACTCAGATATGTTTTTTATATCAATGTTTATGTAATATTG
>Glyma12g20180.1 sequence type=CDS gene model=Glyma12g20180 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGAAAACGAGGCCAGGCAGAAAGGACGTGGACTCGTACACCATAAGAGGAACCAGCAAGATCGTCCGAGCTGGAGACTGTGTTCTGATGCGGCCCTCGGACACGTCGAAGCCGCCTTACGTGGCGCGCGTGGAGAAGATCGAGCAGGACAACAGGAGCAACGTGAAGGTGCGTGTGAGGTGGTACTACCGGCCAGAAGAGTCGATTGGTGGTCGGAGACAGTTCCACGGGGCTAAGGAACTGTTCCTCTCCGACCACTACGATGTGCAAAGTGCACACACCATTGAGGGCAAGTGTGTTGTGCACTCTTTTAAGAACTACACCAAGCTTGAGAATGTGGGTGCTGAGGATTACTATTGTAGATTCGAGTACAAGGCCGCCACCGGGGCTTTCACCCCTGACCGTGTTGCTGTGTATTGCAAATGTGAGATGCCTTATAACCCGGATGATCTCATGGTACAATGTGAAGGGTGCAAGGATTGGTACCATCCTGCTTGCATGGGCATGACTATTGAAGAAGCAAAGAAACTAGATCATTTTGTATGTTCTGAATGTTCATCTGATGATGATATGAAGAAACCCCAAGCTACATTTTCTGCATCACTGGGAGCTGATGGCAAGGTGGAGCCAAAGCGGCGGAAGAGATGA >Glyma12g20180.2 sequence type=CDS gene model=Glyma12g20180 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGAAAACGAGGCCAGGCAGAAAGGACGTGGACTCGTACACCATAAGAGGAACCAGCAAGATCGTCCGAGCTGGAGACTGTGTTCTGATGCGGCCCTCGGACACGTCGAAGCCGCCTTACGTGGCGCGCGTGGAGAAGATCGAGCAGGACAACAGGAGCAACGTGAAGGTGCGTGTGAGGTGGTACTACCGGCCAGAAGAGTCGATTGGTGGTCGGAGACAGTTCCACGGGGCTAAGGAACTGTTCCTCTCCGACCACTACGATGTGCAAAGTGCACACACCATTGAGGGCAAGTGTGTTGTGCACTCTTTTAAGAACTACACCAAGCTTGAGAATGTGGGTGCTGAGGATTACTATTGTAGATTCGAGTACAAGGCCGCCACCGGGGCTTTCACCCCTGACCGTGTTGCTGTGTATTGCAAATGTGAGATGCCTTATAACCCGGATGATCTCATGGTACAATGTGAAGGGTGCAAGGATTGCACCTGCAGAATGAGCGCCCTAAAGGTGTTAAAGAGTTTTAAAGGTCAATTTTGGTAG
>Glyma12g20180.1 sequence type=predicted peptide gene model=Glyma12g20180 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAKTRPGRKDVDSYTIRGTSKIVRAGDCVLMRPSDTSKPPYVARVEKIEQDNRSNVKVRVRWYYRPEESIGGRRQFHGAKELFLSDHYDVQSAHTIEGKCVVHSFKNYTKLENVGAEDYYCRFEYKAATGAFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWYHPACMGMTIEEAKKLDHFVCSECSSDDDMKKPQATFSASLGADGKVEPKRRKR* >Glyma12g20180.2 sequence type=predicted peptide gene model=Glyma12g20180 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAKTRPGRKDVDSYTIRGTSKIVRAGDCVLMRPSDTSKPPYVARVEKIEQDNRSNVKVRVRWYYRPEESIGGRRQFHGAKELFLSDHYDVQSAHTIEGKCVVHSFKNYTKLENVGAEDYYCRFEYKAATGAFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDCTCRMSALKVLKSFKGQFW*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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