SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G53230 | AT | Annotation by Michelle Graham. TAIR10: TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3 | chr1:19850260-19851435 REVERSE LENGTH=391 | SoyBase | E_val: 1.00E-100 | ISS |
| GO:0000165 | GO-bp | Annotation by Michelle Graham. GO Biological Process: MAPK cascade | SoyBase | N/A | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0006612 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane | SoyBase | N/A | ISS |
| GO:0009617 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to bacterium | SoyBase | N/A | ISS |
| GO:0009733 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus | SoyBase | N/A | ISS |
| GO:0009793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy | SoyBase | N/A | ISS |
| GO:0009862 | GO-bp | Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0009867 | GO-bp | Annotation by Michelle Graham. GO Biological Process: jasmonic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0009965 | GO-bp | Annotation by Michelle Graham. GO Biological Process: leaf morphogenesis | SoyBase | N/A | ISS |
| GO:0010027 | GO-bp | Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization | SoyBase | N/A | ISS |
| GO:0010228 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem | SoyBase | N/A | ISS |
| GO:0010310 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of hydrogen peroxide metabolic process | SoyBase | N/A | ISS |
| GO:0010363 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response | SoyBase | N/A | ISS |
| GO:0016226 | GO-bp | Annotation by Michelle Graham. GO Biological Process: iron-sulfur cluster assembly | SoyBase | N/A | ISS |
| GO:0030154 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell differentiation | SoyBase | N/A | ISS |
| GO:0031348 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response | SoyBase | N/A | ISS |
| GO:0035304 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of protein dephosphorylation | SoyBase | N/A | ISS |
| GO:0045893 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0045962 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of development, heterochronic | SoyBase | N/A | ISS |
| GO:0048366 | GO-bp | Annotation by Michelle Graham. GO Biological Process: leaf development | SoyBase | N/A | ISS |
| GO:0048481 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ovule development | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| PF03634 | PFAM | TCP family transcription factor | JGI | ISS | |
| UniRef100_Q8RW43 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: TCP1 protein n=1 Tax=Lupinus albus RepID=Q8RW43_LUPAL | SoyBase | E_val: 6.00E-131 | ISS |
| UniRef100_UPI000233CE93 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233CE93 related cluster n=1 Tax=unknown RepID=UPI000233CE93 | SoyBase | E_val: 0 | ISS |
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Glyma12g20160 not represented in the dataset |
Glyma12g20160 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.12g158900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma12g20160.2 sequence type=CDS gene model=Glyma12g20160 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGAGAACCACAACACCCTCACCAGCACCATCAACAAGCAGCAGCAACACCGTCGAGAGCGGCGATGAGAGGCGGCGGCGGCGGCGAGATTGTGGAGGTGCAAGGCGGCCACATTGTCCGCTCCACCGGACGGAAGGACCGCCACAGCAAGGTCTGCACTGCCAAAGGCCCCCGAGACCGCCGCGTGCGCCTGGCGGCGCACACCGCCATCCAGTTCTACGACGTCCAGGACCGCCTTGGCTACGACCGTCCCAGCAAGGCGGTCGACTGGCTCATCAAGAAAGCCAAGGCAGCCATCGACCAACTCGCGGAGCTCCCGCCATGGAACCCCACCGCCACGCCAATGCAACCGCCTTCCCAAGAAATTGTCCACCGCGAAAACAAATCTCTCGGGATGGACGATTCATTGACAGCCTTCAGTTGCCGCGGCGAGAGCCCCGCTTTCGCCGCGGCTACTAGAGATTCAGAACAATTCTCTCACCCACAAGTAGAGCAGAATGAAAATGCTAACAACATCAGCAGCAGCAGCATCAGCATCAAATACAATAGCGGTTCTGGTTTTCTGCCGGCGTCCTTGGACACTGACAATATTGCGGAGACAATCAAGACTTTCTTTCCAGTGGAGGCGACTACGACGTCGTTTCAGAGTTACCCGCCGGCGCCACCGGATTTGGGGCAGCAAGATCTACGGCTCTCGCTACAGTCCTTTCAGGACCCTATTATGCTTCATCACCAGCCTCAGAGTCACCACGAGCCGGTGCTCTTTGCCGGAACCGCCGCCGCGGCGCTCGGCTTCGACGGCGGTTACGGGTGGTCAGAACACCAGCACCAGAACCATCACTCGGAGGAACAGCGATTGCTCTATGCTGGTGGCAACAGTGGCCATGGCGGTGGGTTTGTGTTCAACACGCCGGCGCCGGTGCCGGCGTTTGGCCAGTTTTTTTCTCAGAGGGGACCCCTTCAGTCCAGTAACACCCCTTCGATTCGTGCTTGGATAGACCCTTCGGTCGATCACCACCACCATCATCATCACTACCTCTCGCAGTTGATCCACCAGGGTTCCGTCGCCGGAGGCAGCGGATTCTCCAGTGGATTCTCCGGCTTCCGCATTCCAGCACGAATTCAGGGTGAAGAGGAACACGACGGCGTATCGGACAAGCCGTCCTCTGCTTCCTCTGATTCTCGCCATTGA
>Glyma12g20160.2 sequence type=predicted peptide gene model=Glyma12g20160 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGEPQHPHQHHQQAAATPSRAAMRGGGGGEIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLAAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAIDQLAELPPWNPTATPMQPPSQEIVHRENKSLGMDDSLTAFSCRGESPAFAAATRDSEQFSHPQVEQNENANNISSSSISIKYNSGSGFLPASLDTDNIAETIKTFFPVEATTTSFQSYPPAPPDLGQQDLRLSLQSFQDPIMLHHQPQSHHEPVLFAGTAAAALGFDGGYGWSEHQHQNHHSEEQRLLYAGGNSGHGGGFVFNTPAPVPAFGQFFSQRGPLQSSNTPSIRAWIDPSVDHHHHHHHYLSQLIHQGSVAGGSGFSSGFSGFRIPARIQGEEEHDGVSDKPSSASSDSRH*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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