Glyma12g19960 - SoyBase

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Report for Sequence Feature Glyma12g19960

Feature Type:	gene_model
Chromosome:	Gm12
Start:	20710830
stop:	20717105
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g19960

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G02250	AT	Annotation by Michelle Graham. TAIR10: O-fucosyltransferase family protein \| chr3:424185-426376 REVERSE LENGTH=512	SoyBase	E_val: 3.00E-52	ISS
GO:0006816	GO-bp	Annotation by Michelle Graham. GO Biological Process: calcium ion transport	SoyBase	N/A	ISS
GO:0007030	GO-bp	Annotation by Michelle Graham. GO Biological Process: Golgi organization	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0010075	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of meristem growth	SoyBase	N/A	ISS
GO:0019761	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucosinolate biosynthetic process	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0016757	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups	SoyBase	N/A	ISS
PTHR12570	Panther	UNCHARACTERIZED	JGI		ISS
PF00224	PFAM	Pyruvate kinase, barrel domain	JGI		ISS
PF05653	PFAM	Protein of unknown function (DUF803)	JGI		ISS
PF10250	PFAM	GDP-fucose protein O-fucosyltransferase	JGI		ISS
UniRef100_G7IT24	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: ATP synthase subunit a chloroplastic n=1 Tax=Medicago truncatula RepID=G7IT24_MEDTR	SoyBase	E_val: 7.00E-55	ISS
UniRef100_I1LSW0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LSW0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma12g19960

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma12g19960 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g159000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g19960

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma12g19960

Limit To All Plant Sequences

>Glyma12g19960.1   sequence type=CDS   gene model=Glyma12g19960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACGTTGCTCGTTTCAATTTCTCTCATGGCACCCACGACTATCATCAGGAAACCCTCAACAATCTCAAGACTGCTATGCACAACACTGGTATACTCTGTGTTGTCATGCTTGACACTAAGGTAGGCTCAGATGTTGTTAATGTCCGCAAGGTTCTGGGGCCACATGCAAAGAATATTCATTTGATGTCTAAGGAGAAGCTGCAGAAAATGGGCATGTTGGGGTGTCTTTTGTGCATTGTTGGATCAACTGTTATTGTGCTGCATGCACCTGAAGAGAAATCTCTTAGTTCTGTACAAGAAATATGGGAATTGGCCATTCAACCTGCATTCCTCTCATACACTGCCTCAACAATTGCCGTGACATTGTTCTTGGTTTTGTATTGTGCTCCCCGTTATGGCCAGACTAATATTTTGGTTTATACTGGAATATGCTCGATAGTTGGGTCCTTGACATTCATGAGTGTAAAAGCAGTTGGCATTGCGGTATGTGGTCCCAGTGGTCGCTGGTATCTGGCAGACAGTGGGTCTGTGCCTGGAGATCTTTTACTTATAATAGGAAAGGCACTTACCCATGCTACTGTTGGCCTATGTCCTGCTGCATCATATAGAGCTTCTCCTGATTATTTTTTGAGTCCTAATGGTGGAGGAAGGACTTCTCTTGCATATAGACTCATGCCACAGGGCAATGCTATATTAGATTGTTCCCTAATTGCAGCAGCTGGCCATGTTATTCCCCAAAGTTATGTTCGAATATCTGTAAGCCAATTTATGGATGACCTTGTTGTCGAAGAACTGATAGGCAATAGATGGGTTTATAAAAACAATGGATACCTTATGGTCTCGTGCAATGGAGGACTCAACCAAATGAGAGTTGCGATATGTGACATGGTGGCTATTGCCAGATATTTCAATGTCACACTTATAGTTCCTGAACTGGATAAAACATCCTTTTGGGCTGATCCCAGTGACTTTCAAGACATATTTGATGTGGATCATTTTATCGCGTCCTTTAGAGATGAAGTGCGGATATTGAAAGAGTTGCCTCCCAGACTCAACATGAAAGTGGAGCGCGGGTTTCTTTACACCATGCCACCTATTAGTTGTCTGATATCTTACTATAAGGACCAGTGTTTGGCTCTACTGAGCTTTAAAAGATTGGCTAAGATTTTGTTAAAACATAAGCACTTAGACAATGAAGGAAAGCTGGAGTTGCTGCACATGATGTCCAACGAAGTGAAGTTGCAGGATCCACGATGTCGGATACAATGTCCTGACATCCTGCCCGAGAATACTGGAGTTGCTGTACAATGCAAGATAAAAGTCAAGTGCAGAAGTGAAGCTGCAGGATCCACGATGTCGGACACGATGTCCTGA

Predicted protein sequences of Glyma12g19960

Limit To All Plant Sequences

>Glyma12g19960.1   sequence type=predicted peptide   gene model=Glyma12g19960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNVARFNFSHGTHDYHQETLNNLKTAMHNTGILCVVMLDTKVGSDVVNVRKVLGPHAKNIHLMSKEKLQKMGMLGCLLCIVGSTVIVLHAPEEKSLSSVQEIWELAIQPAFLSYTASTIAVTLFLVLYCAPRYGQTNILVYTGICSIVGSLTFMSVKAVGIAVCGPSGRWYLADSGSVPGDLLLIIGKALTHATVGLCPAASYRASPDYFLSPNGGGRTSLAYRLMPQGNAILDCSLIAAAGHVIPQSYVRISVSQFMDDLVVEELIGNRWVYKNNGYLMVSCNGGLNQMRVAICDMVAIARYFNVTLIVPELDKTSFWADPSDFQDIFDVDHFIASFRDEVRILKELPPRLNMKVERGFLYTMPPISCLISYYKDQCLALLSFKRLAKILLKHKHLDNEGKLELLHMMSNEVKLQDPRCRIQCPDILPENTGVAVQCKIKVKCRSEAAGSTMSDTMS*

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