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Report for Sequence Feature Glyma12g19435

Feature Type:gene_model
Chromosome:Gm12
Start:19970488
stop:19972026
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma12g19435
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G66840AT Annotation by Michelle Graham. TAIR10: Plant protein of unknown function (DUF827) | chr1:24933998-24936116 REVERSE LENGTH=607 SoyBaseE_val: 7.00E-59ISS
GO:0009637GO-bp Annotation by Michelle Graham. GO Biological Process: response to blue light SoyBaseN/AISS
GO:0009903GO-bp Annotation by Michelle Graham. GO Biological Process: chloroplast avoidance movement SoyBaseN/AISS
GO:0009904GO-bp Annotation by Michelle Graham. GO Biological Process: chloroplast accumulation movement SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
PF05701PFAM Plant protein of unknown function (DUF827) JGI ISS
UniRef100_G7KV75UniRef Annotation by Michelle Graham. Most informative UniRef hit: Protein PLASTID MOVEMENT IMPAIRED n=1 Tax=Medicago truncatula RepID=G7KV75_MEDTR SoyBaseE_val: 3.00E-163ISS
UniRef100_UPI000233DFB3UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233DFB3 related cluster n=1 Tax=unknown RepID=UPI000233DFB3 SoyBaseE_val: 0ISS

Expression Patterns of Glyma12g19435
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma12g19435 not represented in the dataset
Glyma12g19435 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma12g19435 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.12g159400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma12g19435
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma12g19435
>Glyma12g19435.1   sequence type=CDS   gene model=Glyma12g19435   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAATTGGTTGTGACAATATCAGATGTTGATTTCTTGCAGAATGAGTTAAAGTCAGTTAAGGAAATGGATAAAAGGGTTCAAGGAGATGGGAGTACAAAGCAATTGGAAGGAAGATTCAAAAAAGGGGAGGAATTAGAAGACTCTATAGTGTTACAAAATATAACAAAAGAATCGGAGGCAACTAGGAAAGAATTAGCTTTGGTTAGAGAAGAAGGTTTCCAGTTTATGGCCTCTTTGGATGTCATAAGAAATGAGTTGAAGCATGTCACTACTGAGACAAATAGGTTGAAGAAGAAGGAAGGGAAAGTAGACTCAACAATTCAAAATCTCAATTTCAAGATTTTGAGGGCAAAGTCTAAATTAGAAGTTGTGTATGCTGCTAAGGAAAAGGCCAGATCCATAGTCGTGAGTCTATCTCATACTCTTGAAAAGCTGAAGACAGAAACAGAAGAAGCAAAAAAGGAAAATGAGGATGTAAGCCAAGAAGTTGCAGCCACCAAGGAAGAAATTCAAAAAGTTGAGTTAGATATAGACATGACCGAGGAAAGATTGCAAGGCGTCATGCAAAAGCTAGAAGTAGCCAAAGCATCTGAAGCTCTAACCTTAGAGAAGCTGAAAACTCTTACTGAGAGTACCATGAGAGAAAGAGCTTTAACAGCACAGCATAGTTCCATGATCACTATCTCAAAATTTGAGTATGAGTATTTAACAAATCATGCAGCCTCAGCAGAAGAAATTCCTGATAAAAAAGTAGCAGCAGCTGAGGCATGGATTGAAGCTCTCAAGGCCAGCGAGAAGGAAATACTGATGGAAACAAAAATAGCTCAAAGAGAACTCAAAGAATCAAAATTGGAGCAAGAGCTGGAGGTTTACACCAAAGAGAAGATGCTTTCAAGAAGAGTTAGTAGTAGTGAGGAGCTTGACAATTGGCCAAGAAAACGCGAGAAGAGTTCATCCAAGAACTTCCAGAGAGCCATGTCTAGAAAGAGCATCAAACTTAATGGCACTATAACTCCTGCAAGGGGAGCAAAGTTTCAGAAGATTGCTTCACCTGCAGCTCGGCATATCAGTCCTTTTACTATTAAGAAGAGAAAGAAGGTAATACCAAATTTGACAAAGCTTTTTAGGGCAAGAAAAACAATAGGGATAGATAAATTGTAA
Predicted protein sequences of Glyma12g19435
>Glyma12g19435.1   sequence type=predicted peptide   gene model=Glyma12g19435   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKLVVTISDVDFLQNELKSVKEMDKRVQGDGSTKQLEGRFKKGEELEDSIVLQNITKESEATRKELALVREEGFQFMASLDVIRNELKHVTTETNRLKKKEGKVDSTIQNLNFKILRAKSKLEVVYAAKEKARSIVVSLSHTLEKLKTETEEAKKENEDVSQEVAATKEEIQKVELDIDMTEERLQGVMQKLEVAKASEALTLEKLKTLTESTMRERALTAQHSSMITISKFEYEYLTNHAASAEEIPDKKVAAAEAWIEALKASEKEILMETKIAQRELKESKLEQELEVYTKEKMLSRRVSSSEELDNWPRKREKSSSKNFQRAMSRKSIKLNGTITPARGAKFQKIASPAARHISPFTIKKRKKVIPNLTKLFRARKTIGIDKL*






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