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Report for Sequence Feature Glyma12g19265

Feature Type:gene_model
Chromosome:Gm12
Start:19839009
stop:19846254
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma12g19265
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G15010AT Annotation by Michelle Graham. TAIR10: RNA-binding (RRM/RBD/RNP motifs) family protein | chr3:5052844-5054058 FORWARD LENGTH=404 SoyBaseE_val: 3.00E-136ISS
GO:0006952GO-bp Annotation by Michelle Graham. GO Biological Process: defense response SoyBaseN/AISS
GO:0008219GO-bp Annotation by Michelle Graham. GO Biological Process: cell death SoyBaseN/AISS
GO:0009693GO-bp Annotation by Michelle Graham. GO Biological Process: ethylene biosynthetic process SoyBaseN/AISS
GO:0010150GO-bp Annotation by Michelle Graham. GO Biological Process: leaf senescence SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005730GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleolus SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
GO:0003676GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding SoyBaseN/AISS
GO:0003723GO-mf Annotation by Michelle Graham. GO Molecular Function: RNA binding SoyBaseN/AISS
KOG4205 KOG RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 JGI ISS
PTHR24011Panther FAMILY NOT NAMED JGI ISS
PTHR24011:SF217Panther JGI ISS
PF00076PFAM RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) JGI ISS
UniRef100_Q9LKA4UniRef Annotation by Michelle Graham. Most informative UniRef hit: AT3G15010 protein n=1 Tax=Arabidopsis thaliana RepID=Q9LKA4_ARATH SoyBaseE_val: 1.00E-133ISS
UniRef100_UPI0001B63CD8UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0001B63CD8 related cluster n=1 Tax=unknown RepID=UPI0001B63CD8 SoyBaseE_val: 0ISS

Expression Patterns of Glyma12g19265
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma12g19265 not represented in the dataset
Glyma12g19265 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma12g19265 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.12g159600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma12g19265
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma12g19265
>Glyma12g19265.2   sequence type=transcript   gene model=Glyma12g19265   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATCCGACCAAGAAGCGCAAGCTCGACGAGAACGGCTTCATCAACAACGACTCCTCCGAGCCCCTCAAGCTCTCCCCCTCCGACGCCCGCAAGCTCATCGAGCGCTTCACCACTGACCAGCTCCTCGACATCCTCCAGGACACGGTGGCGCGCCACCCCGACGTCCTCGCTGCCGTGCGCGCTGTCTCAGACCCCGACGTCTCCCAGCGTAAGCTCTTCATCCGCGGCCTCGGCTGGGACACCACCACCGACGGCCTCCGCTCCCTCTTCTCCACCTACGGCGACCTCGAGGAGGCCGTCGTCATACTCGACAAGGCCACCGGCAAGTCTAAGGGCTACGGCTTCGTCACCTTCCGCCACGTTGACGGCGCGCTCCTCGCCCTCCGCGAGCCCAGCAAGCGCATCGACGGCCGCGTCACCGTCACGCAGCTCGCCGCCGCCGGAAACTCTGCGTTGAACGCCAACGCCGTCGACGTGGCTCTCCGTAAGATCTACGTCGCCAACGTGCCGCCAGACCTCCCCGCGGACAAGCTTCTTGCACACTTCTCCGTCTACGGTGAAATCGAAGAAGGACCGTTAGGGTTTGATAAACAGACTGGAAAATCGAAAGGGTTTGCTTTGTTTGTTTACAAGTCTCCAGAGGGGGCAAAGGCTGCGTTGATAGATCCAATGAAGACTGTGGAAGGGAGGCAGTTGAGTTGTAAGTTGGCGATTACTGATGGGAAGCAAGGGAAGCGGTCCGGGCCGGACTCGGGCCAGGCCCATCATGGGAATGTTCAGCACGGGCATGGGGATGGTGTGGGAGCAGGAATGGGGATACCTCCGAATTCGGGGTCGGGGTCGGGGCCCGGGCAGTATGGTGGGCCCGGGCATTACGGGCCTACGGTTGGGATGGGCTCTTATGGTGGTTTTGGTGGGCAGCCACCGATGGGCAATAATAACCATCCTCTGAATTCGTCGAATCCGGTACCAGGTTCTATGGCAGGTGCTGGTGGCTATGGTGGTGGGATGGGTGGGCCATATGGTGGATACGGTGGTGGGCCGGGATCAACGGGCTTTGCTGGTGCTGGTGGGATGGGAGCAGGAGGTGGAGGTGTTGGGGGCGGCGGGCTTGGTGGTGCTGGCGGTGGTTCTATGTATAGATTGCCAGGCTCGGGTGGAATGCCTGCTGGTGGTGGAGGTTATCCGGATAGTGGACACTATGGTTTATCAGCTTCATCTGGGTACCAGAATCAGCACCACCCTCCTTCTGGGGCTTCACCTGTGCCTAGGGTTCCGCCCATGTATCCCAACGTGCCCCCTTACTACTGAAGAGGGTTTAGTTTGTTTTGCTGGTTGATGACGAAGGCCTTTGCATCATCTTCAGTGTTTTGGCATAAGATTGTTGATTGCTAATGTGGAGACTGGATGAGAAACATACTGTGTCTAACACTCTTTACTTGAGCCCAGCATTATGTTTATAACGATAAAGAAAGCTTGAGAGATTGATGAACATCTTCGCTTCCTTCCGCTTATTGTACACAAATCCTTTTAGTGTTTAGGGTTTGAAAATAAATGCATTCTTAAATCTAACGAGATGATGAAATTGAAAGGGCAACCTGGTGCTTTTAAACTCTTGCCTTGACATGATCCAAGTGTTGCACCCATTATGGATCAAATATAGGCAGCCTTAACTTGCATTTGCAAGAGACTGATTCTAGAGTCAAACTTGTGACCCTTGATTTCATACTGAAACAAGGCTCTCCTAAATCTGAGATTATATTTACTCAATTTTATAGTAGTTTGATCTTGGATATGGATTATTCAGTGATTCTTTTTTGTTTTCTCTGAACTTGTCCCACAATTTGTTATCTGGATATTTATTTTTGCT

>Glyma12g19265.3   sequence type=transcript   gene model=Glyma12g19265   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATCCGACCAAGAAGCGCAAGCTCGACGAGAACGGCTTCATCAACAACGACTCCTCCGAGCCCCTCAAGCTCTCCCCCTCCGACGCCCGCAAGCTCATCGAGCGCTTCACCACTGACCAGCTCCTCGACATCCTCCAGGACACGGTGGCGCGCCACCCCGACGTCCTCGCTGCCGTGCGCGCTGTCTCAGACCCCGACGTCTCCCAGCGTAAGCTCTTCATCCGCGGCCTCGGCTGGGACACCACCACCGACGGCCTCCGCTCCCTCTTCTCCACCTACGGCGACCTCGAGGAGGCCGTCGTCATACTCGACAAGGCCACCGGCAAGTCTAAGGGCTACGGCTTCGTCACCTTCCGCCACGTTGACGGCGCGCTCCTCGCCCTCCGCGAGCCCAGCAAGCGCATCGACGGCCGCGTCACCGTCACGCAGCTCGCCGCCGCCGGAAACTCTGCGTTGAACGCCAACGCCGTCGACGTGGCTCTCCGTAAGATCTACGTCGCCAACGTGCCGCCAGACCTCCCCGCGGACAAGCTTCTTGCACACTTCTCCGTCTACGGTGAAATCGAAGAAGGACCGTTAGGGTTTGATAAACAGACTGGAAAATCGAAAGGGTTTGCTTTGTTTGTTTACAAGTCTCCAGAGGGGGCAAAGGCTGCGTTGATAGATCCAATGAAGACTGTGGAAGGGAGGCAGTTGAGTTGTAAGTTGGCGATTACTGATGGGAAGCAAGGGAAGCGGTCCGGGCCGGACTCGGGCCAGGCCCATCATGGGAATGTTCAGCACGGGCATGGGGATGGTGTGGGAGCAGGAATGGGGATACCTCCGAATTCGGGGTCGGGGTCGGGGCCCGGGCAGTATGGTGGGCCCGGGCATTACGGGCCTACGGTTGGGATGGGCTCTTATGGTGGTTTTGGTGGGCAGCCACCGATGGGCAATAATAACCATCCTCTGAATTCGTCGAATCCGGTACCAGGTTCTATGGCAGGTGCTGGTGGCTATGGTGGTGGGATGGGTGGGCCATATGGTGGATACGGTGGTGGGCCGGGATCAACGGGCTTTGCTGGTGCTGGTGGGATGGGAGCAGGAGGTGGAGGTGTTGGGGGCGGCGGGCTTGGTGGTGCTGGCGGTGGTTCTATGTATAGATTGCCAGGCTCGGGTGGAATGCCTGCTGGTGGTGGAGGTTATCCGGATAGTGGACACTATGGTTTATCAGCTTCATCTGGGTACCAGAATCAGCACCACCCTCCTTCTGGGGCTTCACCTGTGCCTAGGGTTCCGCCCATGTATCCCAACGTGCCCCCTTACTACTGAAGAGATGTGTTGGAGCATATCCGAGTAATTAAAGTAAGAAAAAGTGGCAGAAGTGAGATTGTGGTCTTGGAAGCTTTCTGAAATGGGTGTTGACAGTGATGGCCTTTGAAAACAAGATGACGGACCTGATTCCACTGACTTACGCCAATTTGGTGCTGCGCTTGTTCTATGCATGTGTCGACTTGTACAGTGAAGTCAGTTTTGTGTCGACTTAAATGTTTTACCCCATATGAAGAGAATTTATAAGAGATTACAGCCACATTATGATAAAATTAAGATGATTTGATGGAAAAGTTACGTATGGTCGTGTAAATTACT
Coding sequences of Glyma12g19265
>Glyma12g19265.1   sequence type=CDS   gene model=Glyma12g19265   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATCCGACCAAGAAGCGCAAGCTCGACGAGAACGGCTTCATCAACAACGACTCCTCCGAGCCCCTCAAGCTCTCCCCCTCCGACGCCCGCAAGCTCATCGAGCGCTTCACCACTGACCAGCTCCTCGACATCCTCCAGGACACGGTGGCGCGCCACCCCGACGTCCTCGCTGCCGTGCGCGCTGTCTCAGACCCCGACGTCTCCCAGCGTAAGCTCTTCATCCGCGGCCTCGGCTGGGACACCACCACCGACGGCCTCCGCTCCCTCTTCTCCACCTACGGCGACCTCGAGGAGGCCGTCGTCATACTCGACAAGGCCACCGGCAAGTCTAAGGGCTACGGCTTCGTCACCTTCCGCCACGTTGACGGCGCGCTCCTCGCCCTCCGCGAGCCCAGCAAGCGCATCGACGGCCGCGTCACCGTCACGCAGCTCGCCGCCGCCGGAAACTCTGCGTTGAACGCCAACGCCGTCGACGTGGCTCTCCGTAAGATCTACGTCGCCAACGTGCCGCCAGACCTCCCCGCGGACAAGCTTCTTGCACACTTCTCCGTCTACGGTGAAATCGAAGAAGGACCGTTAGGGTTTGATAAACAGACTGGAAAATCGAAAGGGTTTGCTTTGTTTGTTTACAAGTCTCCAGAGGGGGCAAAGGCTGCGTTGATAGATCCAATGAAGACTGTGGAAGGGAGGCAGTTGAGTTGTAAGTTGGCGATTACTGATGGGAAGCAAGGGAAGCGGTCCGGGCCGGACTCGGGCCAGGCCCATCATGGGAATGTTCAGCACGGGCATGGGGATGGTGTGGGAGCAGGAATGGGGATACCTCCGAATTCGGGGTCGGGGTCGGGGCCCGGGCAGTATGGTGGGCCCGGGCATTACGGGCCTACGGTTGGGATGGGCTCTTATGGTGGTTTTGGTGGGCAGCCACCGATGGGCAATAATAACCATCCTCTGAATTCGTCGAATCCGGTACCAGGTTCTATGGCAGGTGCTGGTGGCTATGGTGGTGGGATGGGTGGGCCATATGGTGGATACGGTGGTGGGCCGGGATCAACGGGCTTTGCTGGTGCTGGTGGGATGGGAGCAGGAGGTGGAGGTGTTGGGGGCGGCGGGCTTGGTGGTGCTGGCGGTGGTTCTATGTATAGATTGCCAGGCTCGGGTGGAATGCCTGCTGGTGGTGGAGGTTATCCGGATAGTGGACACTATGGTTTATCAGCTTCATCTGGGTACCAGAATCAGCACCACCCTCCTTCTGGGGCTTCACCTGTGCCTAGGGTTCCGCCCATGTATCCCAACGTGCCCCCTTACTACTGA

>Glyma12g19265.2   sequence type=CDS   gene model=Glyma12g19265   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATCCGACCAAGAAGCGCAAGCTCGACGAGAACGGCTTCATCAACAACGACTCCTCCGAGCCCCTCAAGCTCTCCCCCTCCGACGCCCGCAAGCTCATCGAGCGCTTCACCACTGACCAGCTCCTCGACATCCTCCAGGACACGGTGGCGCGCCACCCCGACGTCCTCGCTGCCGTGCGCGCTGTCTCAGACCCCGACGTCTCCCAGCGTAAGCTCTTCATCCGCGGCCTCGGCTGGGACACCACCACCGACGGCCTCCGCTCCCTCTTCTCCACCTACGGCGACCTCGAGGAGGCCGTCGTCATACTCGACAAGGCCACCGGCAAGTCTAAGGGCTACGGCTTCGTCACCTTCCGCCACGTTGACGGCGCGCTCCTCGCCCTCCGCGAGCCCAGCAAGCGCATCGACGGCCGCGTCACCGTCACGCAGCTCGCCGCCGCCGGAAACTCTGCGTTGAACGCCAACGCCGTCGACGTGGCTCTCCGTAAGATCTACGTCGCCAACGTGCCGCCAGACCTCCCCGCGGACAAGCTTCTTGCACACTTCTCCGTCTACGGTGAAATCGAAGAAGGACCGTTAGGGTTTGATAAACAGACTGGAAAATCGAAAGGGTTTGCTTTGTTTGTTTACAAGTCTCCAGAGGGGGCAAAGGCTGCGTTGATAGATCCAATGAAGACTGTGGAAGGGAGGCAGTTGAGTTGTAAGTTGGCGATTACTGATGGGAAGCAAGGGAAGCGGTCCGGGCCGGACTCGGGCCAGGCCCATCATGGGAATGTTCAGCACGGGCATGGGGATGGTGTGGGAGCAGGAATGGGGATACCTCCGAATTCGGGGTCGGGGTCGGGGCCCGGGCAGTATGGTGGGCCCGGGCATTACGGGCCTACGGTTGGGATGGGCTCTTATGGTGGTTTTGGTGGGCAGCCACCGATGGGCAATAATAACCATCCTCTGAATTCGTCGAATCCGGTACCAGGTTCTATGGCAGGTGCTGGTGGCTATGGTGGTGGGATGGGTGGGCCATATGGTGGATACGGTGGTGGGCCGGGATCAACGGGCTTTGCTGGTGCTGGTGGGATGGGAGCAGGAGGTGGAGGTGTTGGGGGCGGCGGGCTTGGTGGTGCTGGCGGTGGTTCTATGTATAGATTGCCAGGCTCGGGTGGAATGCCTGCTGGTGGTGGAGGTTATCCGGATAGTGGACACTATGGTTTATCAGCTTCATCTGGGTACCAGAATCAGCACCACCCTCCTTCTGGGGCTTCACCTGTGCCTAGGGTTCCGCCCATGTATCCCAACGTGCCCCCTTACTACTGA

>Glyma12g19265.3   sequence type=CDS   gene model=Glyma12g19265   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATCCGACCAAGAAGCGCAAGCTCGACGAGAACGGCTTCATCAACAACGACTCCTCCGAGCCCCTCAAGCTCTCCCCCTCCGACGCCCGCAAGCTCATCGAGCGCTTCACCACTGACCAGCTCCTCGACATCCTCCAGGACACGGTGGCGCGCCACCCCGACGTCCTCGCTGCCGTGCGCGCTGTCTCAGACCCCGACGTCTCCCAGCGTAAGCTCTTCATCCGCGGCCTCGGCTGGGACACCACCACCGACGGCCTCCGCTCCCTCTTCTCCACCTACGGCGACCTCGAGGAGGCCGTCGTCATACTCGACAAGGCCACCGGCAAGTCTAAGGGCTACGGCTTCGTCACCTTCCGCCACGTTGACGGCGCGCTCCTCGCCCTCCGCGAGCCCAGCAAGCGCATCGACGGCCGCGTCACCGTCACGCAGCTCGCCGCCGCCGGAAACTCTGCGTTGAACGCCAACGCCGTCGACGTGGCTCTCCGTAAGATCTACGTCGCCAACGTGCCGCCAGACCTCCCCGCGGACAAGCTTCTTGCACACTTCTCCGTCTACGGTGAAATCGAAGAAGGACCGTTAGGGTTTGATAAACAGACTGGAAAATCGAAAGGGTTTGCTTTGTTTGTTTACAAGTCTCCAGAGGGGGCAAAGGCTGCGTTGATAGATCCAATGAAGACTGTGGAAGGGAGGCAGTTGAGTTGTAAGTTGGCGATTACTGATGGGAAGCAAGGGAAGCGGTCCGGGCCGGACTCGGGCCAGGCCCATCATGGGAATGTTCAGCACGGGCATGGGGATGGTGTGGGAGCAGGAATGGGGATACCTCCGAATTCGGGGTCGGGGTCGGGGCCCGGGCAGTATGGTGGGCCCGGGCATTACGGGCCTACGGTTGGGATGGGCTCTTATGGTGGTTTTGGTGGGCAGCCACCGATGGGCAATAATAACCATCCTCTGAATTCGTCGAATCCGGTACCAGGTTCTATGGCAGGTGCTGGTGGCTATGGTGGTGGGATGGGTGGGCCATATGGTGGATACGGTGGTGGGCCGGGATCAACGGGCTTTGCTGGTGCTGGTGGGATGGGAGCAGGAGGTGGAGGTGTTGGGGGCGGCGGGCTTGGTGGTGCTGGCGGTGGTTCTATGTATAGATTGCCAGGCTCGGGTGGAATGCCTGCTGGTGGTGGAGGTTATCCGGATAGTGGACACTATGGTTTATCAGCTTCATCTGGGTACCAGAATCAGCACCACCCTCCTTCTGGGGCTTCACCTGTGCCTAGGGTTCCGCCCATGTATCCCAACGTGCCCCCTTACTACTGA
Predicted protein sequences of Glyma12g19265
>Glyma12g19265.1   sequence type=predicted peptide   gene model=Glyma12g19265   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDPTKKRKLDENGFINNDSSEPLKLSPSDARKLIERFTTDQLLDILQDTVARHPDVLAAVRAVSDPDVSQRKLFIRGLGWDTTTDGLRSLFSTYGDLEEAVVILDKATGKSKGYGFVTFRHVDGALLALREPSKRIDGRVTVTQLAAAGNSALNANAVDVALRKIYVANVPPDLPADKLLAHFSVYGEIEEGPLGFDKQTGKSKGFALFVYKSPEGAKAALIDPMKTVEGRQLSCKLAITDGKQGKRSGPDSGQAHHGNVQHGHGDGVGAGMGIPPNSGSGSGPGQYGGPGHYGPTVGMGSYGGFGGQPPMGNNNHPLNSSNPVPGSMAGAGGYGGGMGGPYGGYGGGPGSTGFAGAGGMGAGGGGVGGGGLGGAGGGSMYRLPGSGGMPAGGGGYPDSGHYGLSASSGYQNQHHPPSGASPVPRVPPMYPNVPPYY*

>Glyma12g19265.2   sequence type=predicted peptide   gene model=Glyma12g19265   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDPTKKRKLDENGFINNDSSEPLKLSPSDARKLIERFTTDQLLDILQDTVARHPDVLAAVRAVSDPDVSQRKLFIRGLGWDTTTDGLRSLFSTYGDLEEAVVILDKATGKSKGYGFVTFRHVDGALLALREPSKRIDGRVTVTQLAAAGNSALNANAVDVALRKIYVANVPPDLPADKLLAHFSVYGEIEEGPLGFDKQTGKSKGFALFVYKSPEGAKAALIDPMKTVEGRQLSCKLAITDGKQGKRSGPDSGQAHHGNVQHGHGDGVGAGMGIPPNSGSGSGPGQYGGPGHYGPTVGMGSYGGFGGQPPMGNNNHPLNSSNPVPGSMAGAGGYGGGMGGPYGGYGGGPGSTGFAGAGGMGAGGGGVGGGGLGGAGGGSMYRLPGSGGMPAGGGGYPDSGHYGLSASSGYQNQHHPPSGASPVPRVPPMYPNVPPYY*

>Glyma12g19265.3   sequence type=predicted peptide   gene model=Glyma12g19265   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDPTKKRKLDENGFINNDSSEPLKLSPSDARKLIERFTTDQLLDILQDTVARHPDVLAAVRAVSDPDVSQRKLFIRGLGWDTTTDGLRSLFSTYGDLEEAVVILDKATGKSKGYGFVTFRHVDGALLALREPSKRIDGRVTVTQLAAAGNSALNANAVDVALRKIYVANVPPDLPADKLLAHFSVYGEIEEGPLGFDKQTGKSKGFALFVYKSPEGAKAALIDPMKTVEGRQLSCKLAITDGKQGKRSGPDSGQAHHGNVQHGHGDGVGAGMGIPPNSGSGSGPGQYGGPGHYGPTVGMGSYGGFGGQPPMGNNNHPLNSSNPVPGSMAGAGGYGGGMGGPYGGYGGGPGSTGFAGAGGMGAGGGGVGGGGLGGAGGGSMYRLPGSGGMPAGGGGYPDSGHYGLSASSGYQNQHHPPSGASPVPRVPPMYPNVPPYY*






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