SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G53250 | AT | Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G53800.1); Has 11909 Blast hits to 7704 proteins in 757 species: Archae - 51; Bacteria - 1338; Metazoa - 4550; Fungi - 987; Plants - 464; Viruses - 24; Other Eukaryotes - 4495 (source: NCBI BLink). | chr1:19857468-19859156 FORWARD LENGTH=371 | SoyBase | E_val: 5.00E-53 | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| UniRef100_D7KKF7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: F12M16.15 n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7KKF7_ARALL | SoyBase | E_val: 1.00E-52 | ISS |
| UniRef100_I1LSV0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=3 Tax=Glycine max RepID=I1LSV0_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma12g18970 not represented in the dataset |
Glyma12g18970 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.12g160300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma12g18970.3 sequence type=CDS gene model=Glyma12g18970 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCTCCACTCCAACTCACTTGTGAGAGCCATGTCCATTTCATTTTTAGCTCACATTCCCAACACTGATTCACGCCTTCTCTTGACCAACAACATGATGGATTGCACTTGCACTTGTCCATTTTACCCTCCAACAACTCTGGCCAAGGCTACAACCCGCAAGTTAACCTTTGTTTGTTCCTCCCAAAGGGTTCTCCCCATTGAGAAGCTTCTTCAACTAAGTGTTGTTGATGTGGGCCCCTCAAATGCTAGTACTGTTGATCTTTCTGATTACTTGAGCAATGGGAATGGGGTTGTTGCCCTTGGTGACTCCCTCAGTGAAGAGGTGCTTAAAGAGAGGATTAGGAGAATGAGAATTGGGCTGGCTAACAAGGGAAAAGTGCCTTGGAACAAAGGAAGGAAACACAGTGCAGAGACCCGGGAGCGAATCAGGCAAAGAACTTTAGAGGCTTTGAGGGACCCCAAGGTAAGGAAGAAAATGGCTGAACATCCCCATTCTCATAGTGATCAAACCAAGGCAAAGATAAGTGATTCACTGAGACGTGTTTGGCATGAGCGGCTGAAGTCAAAAAGATTGGTGGAACAATTTTTTCTTTCATGGGCACAAAGCATAGCAAATGCAGCCAGGAAAGGAGGGATTGGTCAGGAAGAGCTAGATTGGGATAGCTACAATAAGATAAAACAACAGTTGGAGCTCCATCATCTTCTGCAGTCTAAGAAAAAGGGAAAAGAAAAGCTGATGGCAGTTGCTGGAGCAAAGAATATTATCCAGTCATGGAAGGAAAGCATAGCCAAAGCAGCGAAGAAAGGAGGGAGTGGGGAACAAGAACTTGATTGGGATAGCTATGAAAAGATACAAGAAGAAATGGTTCACCTCCGTCAACTTCAGCGTACTACAGAAAAGGCAAAGGAAAAAGAGATGGCAAGGGTAAAAGCAGAGAAAGAAGCACAGATAAAAGCAATTAAAAGGGTAATCCTCACTCAAAAGAAAAAAGATCATCTAGAGAGGGCTAAATTAAAACGGAATATAAAGAGTCATCCCTGTGGAAATGCAAAGGAAGGCAAAGGTTCCTTGGAAGTTACTAAAGAGTTCAAACTTTGCACTGAAGTAACTAAGATTCATATAAGTAAGAACTTCAATGGTGAAGTACCTAGAGAACAAGACGTCTTTAATTCCATTTTTCCAACTCACAATAAATTGGATCTAGAGCTTATCAAGAGAGAAAAAATGCAGAAAGAAGTATCACTTGCAGAACAGATCCAAGCTGCTAGAGACAAAAAAGGCAAACTCCACTGA
>Glyma12g18970.3 sequence type=predicted peptide gene model=Glyma12g18970 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLHSNSLVRAMSISFLAHIPNTDSRLLLTNNMMDCTCTCPFYPPTTLAKATTRKLTFVCSSQRVLPIEKLLQLSVVDVGPSNASTVDLSDYLSNGNGVVALGDSLSEEVLKERIRRMRIGLANKGKVPWNKGRKHSAETRERIRQRTLEALRDPKVRKKMAEHPHSHSDQTKAKISDSLRRVWHERLKSKRLVEQFFLSWAQSIANAARKGGIGQEELDWDSYNKIKQQLELHHLLQSKKKGKEKLMAVAGAKNIIQSWKESIAKAAKKGGSGEQELDWDSYEKIQEEMVHLRQLQRTTEKAKEKEMARVKAEKEAQIKAIKRVILTQKKKDHLERAKLKRNIKSHPCGNAKEGKGSLEVTKEFKLCTEVTKIHISKNFNGEVPREQDVFNSIFPTHNKLDLELIKREKMQKEVSLAEQIQAARDKKGKLH*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
