Glyma12g18950 - SoyBase

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Report for Sequence Feature Glyma12g18950

Feature Type:	gene_model
Chromosome:	Gm12
Start:	19641701
stop:	19645974
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g18950

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G16670	AT	Annotation by Michelle Graham. TAIR10: Protein kinase superfamily protein \| chr1:5697846-5699492 FORWARD LENGTH=390	SoyBase	E_val: 5.00E-166	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0009627	GO-bp	Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance	SoyBase	N/A	ISS
GO:0009697	GO-bp	Annotation by Michelle Graham. GO Biological Process: salicylic acid biosynthetic process	SoyBase	N/A	ISS
GO:0009863	GO-bp	Annotation by Michelle Graham. GO Biological Process: salicylic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0030968	GO-bp	Annotation by Michelle Graham. GO Biological Process: endoplasmic reticulum unfolded protein response	SoyBase	N/A	ISS
GO:0031348	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response	SoyBase	N/A	ISS
GO:0045087	GO-bp	Annotation by Michelle Graham. GO Biological Process: innate immune response	SoyBase	N/A	ISS
GO:0046777	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein autophosphorylation	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
KOG1187	KOG	Serine/threonine protein kinase	JGI		ISS
PTHR24420	Panther	FAMILY NOT NAMED	JGI		ISS
PF00069	PFAM	Protein kinase domain	JGI		ISS
UniRef100_B9SE57	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9SE57_RICCO	SoyBase	E_val: 8.00E-179	ISS
UniRef100_I1LSU7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LSU7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma12g18950

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma12g18950 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g160500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g18950

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma12g18950

Limit To All Plant Sequences

>Glyma12g18950.2   sequence type=transcript   gene model=Glyma12g18950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGGATCCTAACTTAGTAACATATAACAAACAGACACGCTTATGATAGAGTCTGAGTTTTCCCGTTATTATTATTCTACTTTTGCAACTAACGTTTTTTCTATACTTCGATGCTTTAAAATACAAGTTCAGAGCTCCACGAAACGAAACAAGCTCTCTCTTTCTCTTAATTGACTCCAGCAGAGACTTGGTTTAAGAAAAGAGAGTTTCTTCTTCATGTACGGTTGAGTCGTAGCTATTCTTCAGTTTTCAATTCATTTTATCTTATCTTTTATTTCTTCCCACCTACTTTCCGTACACACTTTTTCTCCATTAAAAAAATGCAGAAATGTACATAGGAAACCAGACAATTGTTGCATATATGATATACTCTTCTATCAATTTCGATTGTTTTTGTCCAATTGATGAATGACAGCTATGGAATTCTATTTTATACATTATGTTTAGCAAAGAAACAAGTCAGGAACTAGGGTTGATCAATTGGAGGAGCAGGGTTACTCTGATGACTAGTTGCTTTCATCTTTTCAGAAAGAAAGGATCTTCCTCAGGCACACAGTTGACCGGAGTTGATATAGATGTTTCAGAAATTCAGAATGTCAATATCTACACTTACAGAGAATTGCGAATTGCCACTGAAGGTTTTAGTTCTGCAAACAAGATAGGGCAGGGAGGTTTTGGAGCAGTCTATAAGGGAAAGCTGAGAAACGGTTCTTTGGCAGCTATAAAGGTTTTATCAGCTGAATCAAGACAAGGGATCCGGGAGTTCTTGACAGAAATCAAGGTGATCTCTAGTATAGAGCATGAGAATCTAGTCAAGTTACATGGATGCTGTGTGGAAGACAACCACAGGATTTTGGTATATGGCTATCTTGAGAACAACAGCCTAGCACAAACACTTATTGGTTCAGGCCATAGTAGCATCCAATTAAGTTGGCCTGTAAGGAGGAACATTTGCATAGGTGTTGCCCGGGGCCTTGCATTCCTTCATGAGGAGGTTCGGCCACGCATTATCCATAGAGACATAAAAGCAAGCAATGTACTACTTGACAAAGATCTCCAGCCCAAAATTTCAGATTTTGGCCTTGCAAAGCTTATTCCACCAAACCTGACCCATATTAGTACTCGTGTTGCTGGAACAGCTGGTTATCTAGCACCTGAATATGCAATCCGAAATCAAGTGACTACAAAATCGGATGTATATAGTTTTGGAGTTCTACTATTAGAAATTGTTAGTGGGAGACCTAACACAAACAGACGTTTACCTGTTGAAGAACAGTATCTTCTCACAAGGGTTTGGGATTTGTATGAGAGTGGAGAGGTAGAAAAACTGGTGGATGCTTTTCTAGAAGGAGACTTCAATATTGAGGAGGCAATCAGATTTTGTAAGATTGGTCTCCTTTGCACGCAGGATTCTCCTCAGCTCCGGCCTTCAATGTCCAGTGTGCTTGAGATGCTTTTAGGTGAAAAAGATGTGAATGAGGAGAATGTGACAAAACCAGGCATGATATTTGAATTTGTGGAAGCCAAAAGTGCAGGGAAACAAAAAGGCAAGGCAGAAGTGGATAGTAAATCTTCGTTGGCTGAAGGGAAGCAAGACGAGTCATCTTCATCAGGAACCATGAGCTCTTTTGCTACCATGACCTTCACAGCAATTTATGATAGAAGCAATTAGTTTGATTGTGACTAGGTAGCCTTGTAGTTGGTCCTCAATGATATTTTTTTCTCTCCCCCTCTATCAAAGTTGCCAATCTTTGCTGCATTTTTTGGTTACATACAAGAGTGTAAATTTGTTTAATACCTTCTGATACTATATTAATCAATGGTGATGAGTTCAATTTTTGGAATCCTCCGATCATACAGAGACGAGCAAATTTTTTGTAATAAAGGAGTGTCATTGGTCTATCTAGGCCATATATCACAGTATTTTGAGTCGGGGGATAGTTTAGTTTTGGCTTGTCTTTGTTTAAGAATAATGCCATCCCTGCAGTATGCAAACTGTAATCCTCCGAAGAATCTTTTCAAATGTAGAATTGCATTGCTTTTTCATTGTGATTTTCTGTGTTCATAAACTTTCTCCAGCATTGTATTATTATGCTAGAATTTCCTAGTTTATTATTTGATTCTGACTTTATTGCTGTGTTCTATTGTTAACATTTGTATAATGCAAATGCTTATTCCGGT

Coding sequences of Glyma12g18950

Limit To All Plant Sequences

>Glyma12g18950.1   sequence type=CDS   gene model=Glyma12g18950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACTAGTTGCTTTCATCTTTTCAGAAAGAAAGGATCTTCCTCAGGCACACAGTTGACCGGAGTTGATATAGATGTTTCAGAAATTCAGAATGTCAATATCTACACTTACAGAGAATTGCGAATTGCCACTGAAGGTTTTAGTTCTGCAAACAAGATAGGGCAGGGAGGTTTTGGAGCAGTCTATAAGGGAAAGCTGAGAAACGGTTCTTTGGCAGCTATAAAGGTTTTATCAGCTGAATCAAGACAAGGGATCCGGGAGTTCTTGACAGAAATCAAGGTGATCTCTAGTATAGAGCATGAGAATCTAGTCAAGTTACATGGATGCTGTGTGGAAGACAACCACAGGATTTTGGTATATGGCTATCTTGAGAACAACAGCCTAGCACAAACACTTATTGGTTCAGGCCATAGTAGCATCCAATTAAGTTGGCCTGTAAGGAGGAACATTTGCATAGGTGTTGCCCGGGGCCTTGCATTCCTTCATGAGGAGGTTCGGCCACGCATTATCCATAGAGACATAAAAGCAAGCAATGTACTACTTGACAAAGATCTCCAGCCCAAAATTTCAGATTTTGGCCTTGCAAAGCTTATTCCACCAAACCTGACCCATATTAGTACTCGTGTTGCTGGAACAGCTGGTTATCTAGCACCTGAATATGCAATCCGAAATCAAGTGACTACAAAATCGGATGTATATAGTTTTGGAGTTCTACTATTAGAAATTGTTAGTGGGAGACCTAACACAAACAGACGTTTACCTGTTGAAGAACAGTATCTTCTCACAAGGGTTTGGGATTTGTATGAGAGTGGAGAGGTAGAAAAACTGGTGGATGCTTTTCTAGAAGGAGACTTCAATATTGAGGAGGCAATCAGATTTTGTAAGATTGGTCTCCTTTGCACGCAGGATTCTCCTCAGCTCCGGCCTTCAATGTCCAGTGTGCTTGAGATGCTTTTAGGTGAAAAAGATGTGAATGAGGAGAATGTGACAAAACCAGGCATGATATTTGAATTTGTGGAAGCCAAAAGTGCAGGGAAACAAAAAGGCAAGGCAGAAGTGGATAGTAAATCTTCGTTGGCTGAAGGGAAGCAAGACGAGTCATCTTCATCAGGAACCATGAGCTCTTTTGCTACCATGACCTTCACAGCAATTTATGATAGAAGCAATTAG

>Glyma12g18950.2   sequence type=CDS   gene model=Glyma12g18950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTTAGCAAAGAAACAAGTCAGGAACTAGGGTTGATCAATTGGAGGAGCAGGGTTACTCTGATGACTAGTTGCTTTCATCTTTTCAGAAAGAAAGGATCTTCCTCAGGCACACAGTTGACCGGAGTTGATATAGATGTTTCAGAAATTCAGAATGTCAATATCTACACTTACAGAGAATTGCGAATTGCCACTGAAGGTTTTAGTTCTGCAAACAAGATAGGGCAGGGAGGTTTTGGAGCAGTCTATAAGGGAAAGCTGAGAAACGGTTCTTTGGCAGCTATAAAGGTTTTATCAGCTGAATCAAGACAAGGGATCCGGGAGTTCTTGACAGAAATCAAGGTGATCTCTAGTATAGAGCATGAGAATCTAGTCAAGTTACATGGATGCTGTGTGGAAGACAACCACAGGATTTTGGTATATGGCTATCTTGAGAACAACAGCCTAGCACAAACACTTATTGGTTCAGGCCATAGTAGCATCCAATTAAGTTGGCCTGTAAGGAGGAACATTTGCATAGGTGTTGCCCGGGGCCTTGCATTCCTTCATGAGGAGGTTCGGCCACGCATTATCCATAGAGACATAAAAGCAAGCAATGTACTACTTGACAAAGATCTCCAGCCCAAAATTTCAGATTTTGGCCTTGCAAAGCTTATTCCACCAAACCTGACCCATATTAGTACTCGTGTTGCTGGAACAGCTGGTTATCTAGCACCTGAATATGCAATCCGAAATCAAGTGACTACAAAATCGGATGTATATAGTTTTGGAGTTCTACTATTAGAAATTGTTAGTGGGAGACCTAACACAAACAGACGTTTACCTGTTGAAGAACAGTATCTTCTCACAAGGGTTTGGGATTTGTATGAGAGTGGAGAGGTAGAAAAACTGGTGGATGCTTTTCTAGAAGGAGACTTCAATATTGAGGAGGCAATCAGATTTTGTAAGATTGGTCTCCTTTGCACGCAGGATTCTCCTCAGCTCCGGCCTTCAATGTCCAGTGTGCTTGAGATGCTTTTAGGTGAAAAAGATGTGAATGAGGAGAATGTGACAAAACCAGGCATGATATTTGAATTTGTGGAAGCCAAAAGTGCAGGGAAACAAAAAGGCAAGGCAGAAGTGGATAGTAAATCTTCGTTGGCTGAAGGGAAGCAAGACGAGTCATCTTCATCAGGAACCATGAGCTCTTTTGCTACCATGACCTTCACAGCAATTTATGATAGAAGCAATTAG

Predicted protein sequences of Glyma12g18950

Limit To All Plant Sequences

>Glyma12g18950.1   sequence type=predicted peptide   gene model=Glyma12g18950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTSCFHLFRKKGSSSGTQLTGVDIDVSEIQNVNIYTYRELRIATEGFSSANKIGQGGFGAVYKGKLRNGSLAAIKVLSAESRQGIREFLTEIKVISSIEHENLVKLHGCCVEDNHRILVYGYLENNSLAQTLIGSGHSSIQLSWPVRRNICIGVARGLAFLHEEVRPRIIHRDIKASNVLLDKDLQPKISDFGLAKLIPPNLTHISTRVAGTAGYLAPEYAIRNQVTTKSDVYSFGVLLLEIVSGRPNTNRRLPVEEQYLLTRVWDLYESGEVEKLVDAFLEGDFNIEEAIRFCKIGLLCTQDSPQLRPSMSSVLEMLLGEKDVNEENVTKPGMIFEFVEAKSAGKQKGKAEVDSKSSLAEGKQDESSSSGTMSSFATMTFTAIYDRSN*

>Glyma12g18950.2   sequence type=predicted peptide   gene model=Glyma12g18950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFSKETSQELGLINWRSRVTLMTSCFHLFRKKGSSSGTQLTGVDIDVSEIQNVNIYTYRELRIATEGFSSANKIGQGGFGAVYKGKLRNGSLAAIKVLSAESRQGIREFLTEIKVISSIEHENLVKLHGCCVEDNHRILVYGYLENNSLAQTLIGSGHSSIQLSWPVRRNICIGVARGLAFLHEEVRPRIIHRDIKASNVLLDKDLQPKISDFGLAKLIPPNLTHISTRVAGTAGYLAPEYAIRNQVTTKSDVYSFGVLLLEIVSGRPNTNRRLPVEEQYLLTRVWDLYESGEVEKLVDAFLEGDFNIEEAIRFCKIGLLCTQDSPQLRPSMSSVLEMLLGEKDVNEENVTKPGMIFEFVEAKSAGKQKGKAEVDSKSSLAEGKQDESSSSGTMSSFATMTFTAIYDRSN*

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