SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G62840 | AT | Annotation by Michelle Graham. TAIR10: Small nuclear ribonucleoprotein family protein | chr3:23235727-23236615 REVERSE LENGTH=108 | SoyBase | E_val: 1.00E-46 | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005732 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: small nucleolar ribonucleoprotein complex | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG3459 | KOG | Small nuclear ribonucleoprotein (snRNP) Sm core protein | JGI | ISS | |
| PTHR12777 | Panther | SMALL NUCLEAR RIBONUCLEOPROTEIN SM D2 | JGI | ISS | |
| PF01423 | PFAM | LSM domain | JGI | ISS | |
| UniRef100_B9SNF9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Small nuclear ribonucleoprotein sm d2, putative n=1 Tax=Ricinus communis RepID=B9SNF9_RICCO | SoyBase | E_val: 9.00E-46 | ISS |
| UniRef100_C6T6A5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T6A5_SOYBN | SoyBase | E_val: 8.00E-46 | ISS |
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Glyma12g18710 not represented in the dataset |
Glyma12g18710 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.12g158300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma12g18710.2 sequence type=transcript gene model=Glyma12g18710 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGGAAGATAATGAGGAAGAGGAGTTCAACACCGAACCGCTATTTGTACTCATGATGAGTGTTAAAAATAATACTCAGGTACTGATAAATTGTCAGAACAACAAAAAGCTTCTGGGTCGTGTAAGGGCTTTTGACAGGAACTGCAACATGGTTCTTGAAAATGTCAGGGAGATATGGACTGAGCCAGTCAACAAGGATAGATTCATCAGCAAAATGTTTCTCCGTGGAGATTCTGTCACCATTGTTCTTAGGAACCCCAAATGA
>Glyma12g18710.1 sequence type=CDS gene model=Glyma12g18710 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGGAAGATAATGAGGAAGAGGAGTTCAACACCGAACCGCTATTTGTACTCATGATGAGTGTTAAAAATAATACTCAGGTACTGATAAATTGTCAGAACAACAAAAAGCTTCTGGGTCGTGTAAGGGCTTTTGACAGGAACTGCAACATGGTTCTTGAAAATGTCAGGGAGATATGGACTGAGGTGCCAAAGACTGGTAAAGGAAAGAAAAACGCCTAG >Glyma12g18710.2 sequence type=CDS gene model=Glyma12g18710 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGGAAGATAATGAGGAAGAGGAGTTCAACACCGAACCGCTATTTGTACTCATGATGAGTGTTAAAAATAATACTCAGGTACTGATAAATTGTCAGAACAACAAAAAGCTTCTGGGTCGTGTAAGGGCTTTTGACAGGAACTGCAACATGGTTCTTGAAAATGTCAGGGAGATATGGACTGAGCCAGTCAACAAGGATAGATTCATCAGCAAAATGTTTCTCCGTGGAGATTCTGTCACCATTGTTCTTAGGAACCCCAAATGA
>Glyma12g18710.1 sequence type=predicted peptide gene model=Glyma12g18710 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEEDNEEEEFNTEPLFVLMMSVKNNTQVLINCQNNKKLLGRVRAFDRNCNMVLENVREIWTEVPKTGKGKKNA* >Glyma12g18710.2 sequence type=predicted peptide gene model=Glyma12g18710 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEEDNEEEEFNTEPLFVLMMSVKNNTQVLINCQNNKKLLGRVRAFDRNCNMVLENVREIWTEPVNKDRFISKMFLRGDSVTIVLRNPK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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