Glyma12g18710 - SoyBase

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Report for Sequence Feature Glyma12g18710

Feature Type:	gene_model
Chromosome:	Gm12
Start:	19421359
stop:	19422163
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g18710

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G62840	AT	Annotation by Michelle Graham. TAIR10: Small nuclear ribonucleoprotein family protein \| chr3:23235727-23236615 REVERSE LENGTH=108	SoyBase	E_val: 1.00E-46	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005732	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: small nucleolar ribonucleoprotein complex	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG3459	KOG	Small nuclear ribonucleoprotein (snRNP) Sm core protein	JGI		ISS
PTHR12777	Panther	SMALL NUCLEAR RIBONUCLEOPROTEIN SM D2	JGI		ISS
PF01423	PFAM	LSM domain	JGI		ISS
UniRef100_B9SNF9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Small nuclear ribonucleoprotein sm d2, putative n=1 Tax=Ricinus communis RepID=B9SNF9_RICCO	SoyBase	E_val: 9.00E-46	ISS
UniRef100_C6T6A5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T6A5_SOYBN	SoyBase	E_val: 8.00E-46	ISS

Expression Patterns of Glyma12g18710

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma12g18710 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g158300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g18710

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma12g18710

Limit To All Plant Sequences

>Glyma12g18710.2   sequence type=transcript   gene model=Glyma12g18710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGAAGATAATGAGGAAGAGGAGTTCAACACCGAACCGCTATTTGTACTCATGATGAGTGTTAAAAATAATACTCAGGTACTGATAAATTGTCAGAACAACAAAAAGCTTCTGGGTCGTGTAAGGGCTTTTGACAGGAACTGCAACATGGTTCTTGAAAATGTCAGGGAGATATGGACTGAGCCAGTCAACAAGGATAGATTCATCAGCAAAATGTTTCTCCGTGGAGATTCTGTCACCATTGTTCTTAGGAACCCCAAATGA

Coding sequences of Glyma12g18710

Limit To All Plant Sequences

>Glyma12g18710.1   sequence type=CDS   gene model=Glyma12g18710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGAAGATAATGAGGAAGAGGAGTTCAACACCGAACCGCTATTTGTACTCATGATGAGTGTTAAAAATAATACTCAGGTACTGATAAATTGTCAGAACAACAAAAAGCTTCTGGGTCGTGTAAGGGCTTTTGACAGGAACTGCAACATGGTTCTTGAAAATGTCAGGGAGATATGGACTGAGGTGCCAAAGACTGGTAAAGGAAAGAAAAACGCCTAG

>Glyma12g18710.2   sequence type=CDS   gene model=Glyma12g18710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGAAGATAATGAGGAAGAGGAGTTCAACACCGAACCGCTATTTGTACTCATGATGAGTGTTAAAAATAATACTCAGGTACTGATAAATTGTCAGAACAACAAAAAGCTTCTGGGTCGTGTAAGGGCTTTTGACAGGAACTGCAACATGGTTCTTGAAAATGTCAGGGAGATATGGACTGAGCCAGTCAACAAGGATAGATTCATCAGCAAAATGTTTCTCCGTGGAGATTCTGTCACCATTGTTCTTAGGAACCCCAAATGA

Predicted protein sequences of Glyma12g18710

Limit To All Plant Sequences

>Glyma12g18710.1   sequence type=predicted peptide   gene model=Glyma12g18710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEEDNEEEEFNTEPLFVLMMSVKNNTQVLINCQNNKKLLGRVRAFDRNCNMVLENVREIWTEVPKTGKGKKNA*

>Glyma12g18710.2   sequence type=predicted peptide   gene model=Glyma12g18710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEEDNEEEEFNTEPLFVLMMSVKNNTQVLINCQNNKKLLGRVRAFDRNCNMVLENVREIWTEPVNKDRFISKMFLRGDSVTIVLRNPK*

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