SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G18380 | AT | Annotation by Michelle Graham. TAIR10: sequence-specific DNA binding transcription factors;sequence-specific DNA binding | chr3:6311002-6313181 REVERSE LENGTH=348 | SoyBase | E_val: 9.00E-130 | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0009560 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo sac egg cell differentiation | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| GO:0043565 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding | SoyBase | N/A | ISS |
| PF00046 | PFAM | Homeobox domain | JGI | ISS | |
| UniRef100_B9RX94 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: DNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9RX94_RICCO | SoyBase | E_val: 2.00E-144 | ISS |
| UniRef100_I1LSU3 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LSU3_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma12g18490 not represented in the dataset |
Glyma12g18490 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.12g158000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma12g18490.2 sequence type=transcript gene model=Glyma12g18490 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AAAATTTGCTCTGCTATTCTCCGTAAAACAAAAAATGGAAGTAGGATACTTAGCAAATCAGATCGAACAAGAGCCAAACGGTTGAATTTTGGTATCAATCGCTTTACATGTCACAAGCAGGAGAATTTTGGTATCAAATTCGCCACCATTCTTTGGAGCTTCTGGAAGCAGCGAAACCGTAAGATATGGAACAATCAGTACAAGCCAGCAACAATCACAATTCAACAAGCTTTCCAATACCTTTCTGAGTGGCAACAAGCTTGCTTTCACCGAACCAGCACTATCTCTTCCCACCTCGATCAATACAACTCGACATGACAGAAACCTTCCCATGGGCGCATTAAGTGCAACATTGATGCAGCACTTTTCCAGCAACAACTATGTTTCGGAATTGGTCTTTGTTTGAAAAATCACAATGGCTCATTTCTCCAAGCTCAAAACATGGCAACATCGAACTCCAAACCCGATTGAGGCAAAAGCATCGGGTCTAATCCAATCTCTGACTTCGTTGAAGGATCTAAATTACCAGAACATTGATTTTGAGCTTGACAACAAGGTAGCAGAGATGGAAGCTATTCTTCAAGAACATAACAATGCAATGCCATCACGTGATGTTCTTACAACTCTTGCAGAGAAGTTCAGTGAATCACAAGATCGTAAAGGCAAGATTGCAGTGCAGATGAAGCAAGTTTGGAATTGGTTTCAAAATAAGCGGTATGCGATAAGAGCAAAATCAAGTAAGACTCCTGGGAAGTTAAATATTACACCTATGCCTCGGGGGGGTTACAATTCAACCCCAATAGGGAGGGTGCCTCAACAACCAACAGCTGCTCCAATTCCCGCTGCTTCTGCTACAGTTCCAACAGCAGTAAAAGCAACTCCAGAAAATTCAGTTTTGGAATTTGAAGCTAAATCTGGAAGGGATGGAGCATGGTATGATGTGGCTACCTTTCTATCACACAGATATTTAGAAACAAGTGATCCGGAAGTGCTGGTACGATTTGCTGGTTTTGGACCTGAGGAAGATGAGTGGATTAACATTCGAAAGCATGTCAGGCCACGCTCTTTGCCTTGTGAATCATCAGAATGCGTTGTAGTCATCCCTGGCGATCTCATACTTTGTTTTCAGGAAGGTAAGGAGCAAGCCCTTTACTTTGATGCCCATGTCCTTGATGCTCAAAGACGAAGGCATGATGTACGAGGCTGCCGTTGTAGATTTCTGGTTCGTTATGATCATGATCAGTCAGAGGAAATCGTGCCGCTTAGGAAGATTTGTCGCCGGCCCGAAACCGATTATCGATTACAGCAACTTCATGCTGTGAATGAGGCAGCACCTATGGATCAGCAGAAAACTGGGATGGATCCAGCAGCAAATGTTAATGCCGTAAGGGCTACTACTACTGAAACAGCAGCAAATGTTAATGCCGTAAGGGCCACTACTACTGAAACAGTGCCGAAGCAGCTGATTGCAGCAAACATTCATATGGAGACAGTTCCAGTTGTGCAAACAAATGTTCCTCAACCTCCACAAAGTATGGATATGGGTGTGGATCAAAAGAAAGCTGAAACAAATACTGATGTTCAAGCAGGAAATTCCATCATCACCCCAGGCAGTGTCCTTACTAACATCATTACTACAAGCGGTGTTCCTAAAGTCTCTAGTCAGACTCAGAACATGGTTGAATGAAAATAGCTGTTTCATTTTTCCAAACTTGATTAGACTTGAGTACATTCTTTTGTTTTTTAGAACTATTAGCTATCTGGTGTAGTTTATCTTCAGCAAACAATGCTTATAAGTGACTTTCTCTAGCTATTTTATTTGAACCGTAGAAATTAAAAGAAAAATGAGATCATACAATTATCGAGCATATAGCGGGGCATTTTTTTTTTCTTGAAAAAAAGATAAAGAATATGTGATATT
>Glyma12g18490.1 sequence type=CDS gene model=Glyma12g18490 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGTCGTCCACCGAGTAATGGGGGCCCAGCCTTTCGCTTCACTCAGCCTGAGGTAGCAGAGATGGAAGCTATTCTTCAAGAACATAACAATGCAATGCCATCACGTGATGTTCTTACAACTCTTGCAGAGAAGTTCAGTGAATCACAAGATCGTAAAGGCAAGATTGCAGTGCAGATGAAGCAAGTTTGGAATTGGTTTCAAAATAAGCGGTATGCGATAAGAGCAAAATCAAGTAAGACTCCTGGGAAGTTAAATATTACACCTATGCCTCGGGGGGGTTACAATTCAACCCCAATAGGGAGGGTGCCTCAACAACCAACAGCTGCTCCAATTCCCGCTGCTTCTGCTACAGTTCCAACAGCAGTAAAAGCAACTCCAGAAAATTCAGTTTTGGAATTTGAAGCTAAATCTGGAAGGGATGGAGCATGGTATGATGTGGCTACCTTTCTATCACACAGATATTTAGAAACAAGTGATCCGGAAGTGCTGGTACGATTTGCTGGTTTTGGACCTGAGGAAGATGAGTGGATTAACATTCGAAAGCATGTCAGGCCACGCTCTTTGCCTTGTGAATCATCAGAATGCGTTGTAGTCATCCCTGGCGATCTCATACTTTGTTTTCAGGAAGGTAAGGAGCAAGCCCTTTACTTTGATGCCCATGTCCTTGATGCTCAAAGACGAAGGCATGATGTACGAGGCTGCCGTTGTAGATTTCTGGTTCGTTATGATCATGATCAGTCAGAGGAAATCGTGCCGCTTAGGAAGATTTGTCGCCGGCCCGAAACCGATTATCGATTACAGCAACTTCATGCTGTGAATGAGGCAGCACCTATGGATCAGCAGAAAACTGGGATGGATCCAGCAGCAAATGTTAATGCCGTAAGGGCTACTACTACTGAAACAGCAGCAAATGTTAATGCCGTAAGGGCCACTACTACTGAAACAGTGCCGAAGCAGCTGATTGCAGCAAACATTCATATGGAGACAGTTCCAGTTGTGCAAACAAATGTTCCTCAACCTCCACAAAGTATGGATATGGGTGTGGATCAAAAGAAAGCTGAAACAAATACTGATGTTCAAGCAGGAAATTCCATCATCACCCCAGGCAGTGTCCTTACTAACATCATTACTACAAGCGGTGTTCCTAAAGTCTCTAGTCAGACTCAGAACATGGTTGAATGA >Glyma12g18490.2 sequence type=CDS gene model=Glyma12g18490 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTCATTTCTCCAAGCTCAAAACATGGCAACATCGAACTCCAAACCCGATTGAGGCAAAAGCATCGGGTCTAATCCAATCTCTGACTTCGTTGAAGGATCTAAATTACCAGAACATTGATTTTGAGCTTGACAACAAGGTAGCAGAGATGGAAGCTATTCTTCAAGAACATAACAATGCAATGCCATCACGTGATGTTCTTACAACTCTTGCAGAGAAGTTCAGTGAATCACAAGATCGTAAAGGCAAGATTGCAGTGCAGATGAAGCAAGTTTGGAATTGGTTTCAAAATAAGCGGTATGCGATAAGAGCAAAATCAAGTAAGACTCCTGGGAAGTTAAATATTACACCTATGCCTCGGGGGGGTTACAATTCAACCCCAATAGGGAGGGTGCCTCAACAACCAACAGCTGCTCCAATTCCCGCTGCTTCTGCTACAGTTCCAACAGCAGTAAAAGCAACTCCAGAAAATTCAGTTTTGGAATTTGAAGCTAAATCTGGAAGGGATGGAGCATGGTATGATGTGGCTACCTTTCTATCACACAGATATTTAGAAACAAGTGATCCGGAAGTGCTGGTACGATTTGCTGGTTTTGGACCTGAGGAAGATGAGTGGATTAACATTCGAAAGCATGTCAGGCCACGCTCTTTGCCTTGTGAATCATCAGAATGCGTTGTAGTCATCCCTGGCGATCTCATACTTTGTTTTCAGGAAGGTAAGGAGCAAGCCCTTTACTTTGATGCCCATGTCCTTGATGCTCAAAGACGAAGGCATGATGTACGAGGCTGCCGTTGTAGATTTCTGGTTCGTTATGATCATGATCAGTCAGAGGAAATCGTGCCGCTTAGGAAGATTTGTCGCCGGCCCGAAACCGATTATCGATTACAGCAACTTCATGCTGTGAATGAGGCAGCACCTATGGATCAGCAGAAAACTGGGATGGATCCAGCAGCAAATGTTAATGCCGTAAGGGCTACTACTACTGAAACAGCAGCAAATGTTAATGCCGTAAGGGCCACTACTACTGAAACAGTGCCGAAGCAGCTGATTGCAGCAAACATTCATATGGAGACAGTTCCAGTTGTGCAAACAAATGTTCCTCAACCTCCACAAAGTATGGATATGGGTGTGGATCAAAAGAAAGCTGAAACAAATACTGATGTTCAAGCAGGAAATTCCATCATCACCCCAGGCAGTGTCCTTACTAACATCATTACTACAAGCGGTGTTCCTAAAGTCTCTAGTCAGACTCAGAACATGGTTGAATGA
>Glyma12g18490.1 sequence type=predicted peptide gene model=Glyma12g18490 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGRPPSNGGPAFRFTQPEVAEMEAILQEHNNAMPSRDVLTTLAEKFSESQDRKGKIAVQMKQVWNWFQNKRYAIRAKSSKTPGKLNITPMPRGGYNSTPIGRVPQQPTAAPIPAASATVPTAVKATPENSVLEFEAKSGRDGAWYDVATFLSHRYLETSDPEVLVRFAGFGPEEDEWINIRKHVRPRSLPCESSECVVVIPGDLILCFQEGKEQALYFDAHVLDAQRRRHDVRGCRCRFLVRYDHDQSEEIVPLRKICRRPETDYRLQQLHAVNEAAPMDQQKTGMDPAANVNAVRATTTETAANVNAVRATTTETVPKQLIAANIHMETVPVVQTNVPQPPQSMDMGVDQKKAETNTDVQAGNSIITPGSVLTNIITTSGVPKVSSQTQNMVE* >Glyma12g18490.2 sequence type=predicted peptide gene model=Glyma12g18490 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAHFSKLKTWQHRTPNPIEAKASGLIQSLTSLKDLNYQNIDFELDNKVAEMEAILQEHNNAMPSRDVLTTLAEKFSESQDRKGKIAVQMKQVWNWFQNKRYAIRAKSSKTPGKLNITPMPRGGYNSTPIGRVPQQPTAAPIPAASATVPTAVKATPENSVLEFEAKSGRDGAWYDVATFLSHRYLETSDPEVLVRFAGFGPEEDEWINIRKHVRPRSLPCESSECVVVIPGDLILCFQEGKEQALYFDAHVLDAQRRRHDVRGCRCRFLVRYDHDQSEEIVPLRKICRRPETDYRLQQLHAVNEAAPMDQQKTGMDPAANVNAVRATTTETAANVNAVRATTTETVPKQLIAANIHMETVPVVQTNVPQPPQSMDMGVDQKKAETNTDVQAGNSIITPGSVLTNIITTSGVPKVSSQTQNMVE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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