SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G14890 | AT | Annotation by Michelle Graham. TAIR10: phosphoesterase | chr3:5008751-5013060 FORWARD LENGTH=684 | SoyBase | E_val: 8.00E-135 | ISS |
| GO:0006261 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA-dependent DNA replication | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| PTHR12083 | Panther | POLYNUCLEOTIDE KINASE- 3'-PHOSPHATASE | JGI | ISS | |
| PF00645 | PFAM | Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region | JGI | ISS | |
| PF08645 | PFAM | Polynucleotide kinase 3 phosphatase | JGI | ISS | |
| UniRef100_B9SEU6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Polynucleotide kinase-3'-phosphatase, putative n=1 Tax=Ricinus communis RepID=B9SEU6_RICCO | SoyBase | E_val: 3.00E-144 | ISS |
| UniRef100_UPI000233CD2D | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233CD2D related cluster n=1 Tax=unknown RepID=UPI000233CD2D | SoyBase | E_val: 0 | ISS |
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Glyma12g18403 not represented in the dataset |
Glyma12g18403 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.12g157700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma12g18403.2 sequence type=transcript gene model=Glyma12g18403 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TGGGTGCACCAGCAATAATGGGTGCACCTAGCAACTCCCAGCTCATAACCCTATGCTGTTCCTGAATTCGCCCAAATTCTCTCTCTGCCTCTTTACTCACTCACTCACACTCCGCTCCGCTTAACTGTAATGGAACCATTCCATGCTCCGAATCCCCAACTTCATCGCTGTCAACGTCCGTCACCGTCTCCGTAACTTCCCTAATCCTATTCCTTTCCTTCTCTCCGTTTCCGTCGCTGCATCTCTCCCTCCGTTACGGAACCGAAGCCCGTCACAGATGGCGGCTCGCGAATCGATGATGGCGGATTACGCGAAATCGGGGAAGTCGTCGTGCAGGGCGTGTTCCCAAAAGATCGAAGCGAAGGCATTGAGGCTGGCTTCGGTCTCCAAAGGAAATGGTCCGTACGACATCGTCAAGTGGCACCACCTCCGTTGCTTCCCTCTTTCCTCTCACTCTCACTCCTCTCCTGAGAGCATCAGAGGCTTTTCCTCCTTGAAGAGTAGTGACCAGGAAGCTCTGAAGAAGTTATTTGCTGAAAATAACAAGTCTGAAGAGAAGGTTAATGAAGCAGTGGAAGATGTACGAAATGAGCTGCAAGAGACTGGAGAGCGTGGTTCAAAGAGATTAAGGAGTAGTGACCAGGAAGCTCTGAAGAAGTTATTTGCTGAAAATAACAAGTCTGAAGAGAAGTTGTGCACACCTGATGTTAAAGCTGTGGTGAACATTAAATTTTCAGTTTCTGATGTCAAGAGCAATTACAAGGATGCTACCCTTTTACCAAAATGGAAGGCATTCCAAACAGTCATATTTCTTGAACGGGATGATGGTCTGCATGATTCAAGTAAAATCGCTGCATTTGATTTTGATGGATGTCTTGTAAAAACAGATGTGAAAAGAGTGGGTGCAGATGCTTGGTCCCTTATGCATTCGTCTATTCCTGATAAACTACAAAGCCTATACAATGATGGCTACAAGTTGGTAATTTTTACCAATGAATCCAATATTGAACGTTGGAAGAATAAGAGGCAAGTAGCTGTGGACTCGAAAATTGGACGTCTAAATAATTTTATTGTGAAAGTGAAGGTTCCAGTTCAGGTTTTTATAGCTTGTGGGGTAGGTAGTAAATCAGGTAAAGTAAACAAAAAGGAAGATGATCCTTTTCGCAAACCCAAACCAGGGATGTGGCATCTTATGGAGCAACACTTCAACTCTGGCATTGCCATTGATATGGATAAATCCTTTTTTGTTGGTGATGCAGCCGGGAGAGAATCAGATCACAGTGTCGCTGATATTAAATTTGCAGAGGCCATTGGTTTAAAATTTTATGTCCCAGAAGAGTACTTCGCTTGAGCATCTAATTAAGTCATTGGTTCATAGGAAGGTTAAGGTCTTATAGGTGTCCAGTTTTGTTTGAAAGTGACATTACCAACTGGAAGTATGGAACAGAAAGGATGTAAATGAATTTCTGGGCAATCCTAAACCCTAAACTTAACGCATAGTCGACTAATTTGTGAGCAATCCCAAATTTATTTTATGGTGCTTCAACTTGATTCTTATCGACCAGCTTTATTTCATTTTAAAATAGATATAATTTCTAAAGAACCAGGACCGTGGTTGTTTCGGATCCAAAATTTAAATTGGAGAAAATGTATATTATTAAAGAGATTTTATATTGTCACTTAATTTAAAAGTGTATGTTTG >Glyma12g18403.3 sequence type=transcript gene model=Glyma12g18403 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TGGGTGCACCAGCAATAATGGGTGCACCTAGCAACTCCCAGCTCATAACCCTATGCTGTTCCTGAATTCGCCCAAATTCTCTCTCTGCCTCTTTACTCACTCACTCACACTCCGCTCCGCTTAACTGTAATGGAACCATTCCATGCTCCGAATCCCCAACTTCATCGCTGTCAACGTCCGTCACCGTCTCCGTAACTTCCCTAATCCTATTCCTTTCCTTCTCTCCGTTTCCGTCGCTGCATCTCTCCCTCCGTTACGGAACCGAAGCCCGTCACAGATGGCGGCTCGCGAATCGATGATGGCGGATTACGCGAAATCGGGGAAGTCGTCGTGCAGGGCGTGTTCCCAAAAGATCGAAGCGAAGGCATTGAGGCTGGCTTCGGTCTCCAAAGGAAATGGTCCGTACGACATCGTCAAGTGGCACCACCTCCGTTGCTTCCCTCTTTCCTCTCACTCTCACTCCTCTCCTGAGAGCATCAGAGGCTTTTCCTCCTTGAAGAGTAGTGACCAGGAAGCTCTGAAGAAGTTATTTGCTGAAAATAACAAGTCTGAAGAGAAGTTGTGCACACCTGATGTTAAAGCTGTGGTGAACATTAAATTTTCAGTTTCTGATGTCAAGAGCAATTACAAGGATGCTACCCTTTTACCAAAATGGAAGGCATTCCAAACAGTCATATTTCTTGAACGGGATGATGGTCTGCATGATTCAAGTAAAATCGCTGCATTTGATTTTGATGGATGTCTTGTAAAAACAGATGTGAAAAGAGTGGGTGCAGATGCTTGGTCCCTTATGCATTCGTCTATTCCTGATAAACTACAAAGCCTATACAATGATGGCTACAAGTTGGTAATTTTTACCAATGAATCCAATATTGAACGTTGGAAGAATAAGAGGCAAGTAGCTGTGGACTCGAAAATTGGACGTCTAAATAATTTTATTGTGAAAGTGAAGGTTCCAGTTCAGGTTTTTATAGCTTGTGGGGTAGGTAGTAAATCAGGTAAAGTAAACAAAAAGGAAGATGATCCTTTTCGCAAACCCAAACCAGGGATGTGGCATCTTATGGAGCAACACTTCAACTCTGGCATTGCCATTGATATGGATAAATCCTTTTTTGTTGGTGATGCAGCCGGGAGAGAATCAGATCACAGTGTCGCTGATATTAAATTTGCAGAGGCCATTGGTTTAAAATTTTATGTCCCAGAAGAGTACTTCGCTTGAGCATCTAATTAAGTCATTGGTTCATAGGAAGGTTAAGGTCTTATAGGTGTCCAGTTTTGTTTGAAAGTGACATTACCAACTGGAAGTATGGAACAGAAAGGATGTAAATGAATTTCTGGGCAATCCTAAACCCTAAACTTAACGCATAGTCGACTAATTTGTGAGCAATCCCAAATTTATTTTATGGTGCTTCAACTTGATTCTTATCGACCAGCTTTATTTCATTTTAAAATAGATATAATTTCTAAAGAACCAGGACCGTGGTTGTTTCGGATCCAAAATTTAAATTGGAGAAAATGTATATTATTAAAGAGATTTTATATTGTCACTTAATTTAAAAGTGTATGTTTG
>Glyma12g18403.1 sequence type=CDS gene model=Glyma12g18403 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCTCCGAATCCCCAACTTCATCGCTGTCAACGTCCGTCACCGTCTCCGTAACTTCCCTAATCCTATTCCTTTCCTTCTCTCCGTTTCCGTCGCTGCATCTCTCCCTCCGTTACGGAACCGAAGCCCGTCACAGATGGCGGCTCGCGAATCGATGATGGCGGATTACGCGAAATCGGGGAAGTCGTCGTGCAGGGCGTGTTCCCAAAAGATCGAAGCGAAGGCATTGAGGCTGGCTTCGGTCTCCAAAGGAAATGGTCCGTACGACATCGTCAAGTGGCACCACCTCCGTTGCTTCCCTCTTTCCTCTCACTCTCACTCCTCTCCTGAGAGCATCAGAGGCTTTTCCTCCTTGAAGAGTAGTGACCAGGAAGCTCTGAAGAAGTTATTTGCTGAAAATAACAAGTCTGAAGAGAAGGTTAATGAAGCAGTGGAAGATGTACGAAATGAGCTGCAAGAGACTGGAGAGCGTGGTTCAAAGAGATTAAGGAGTAGTGACCAGGAAGCTCTGAAGAAGTTATTTGCTGAAAATAACAAGTCTGAAGAGAAGTTGTGCACACCTGATGTTAAAGCTGTGGTGAACATTAAATTTTCAGTTTCTGATGTCAAGAGCAATTACAAGGATGCTACCCTTTTACCAAAATGGAAGGCATTCCAAACAGTCATATTTCTTGAACGGGATGATGGTCTGCATGATTCAAGTAAAATCGCTGCATTTGATTTTGATGGATGTCTTGTAAAAACAGATGTGAAAAGAGTGGGTGCAGATGCTTGGTCCCTTATGCATTCGTCTATTCCTGATAAACTACAAAGCCTATACAATGATGGCTACAAGTTGGTAATTTTTACCAATGAATCCAATATTGAACGTTGGAAGAATAAGAGGCAAGTAGCTGTGGACTCGAAAATTGGACGTCTAAATAATTTTATTGTGAAAGTGAAGGTTCCAGTTCAGGTTTTTATAGCTTGTGGGGTAGGTAGTAAATCAGGTAAAGTAAACAAAAAGGAAGATGATCCTTTTCGCAAACCCAAACCAGGGATGTGGCATCTTATGGAGCAACACTTCAACTCTGGCATTGCCATTGATATGGATAAATCCTTTTTTGTTGGTGATGCAGCCGGGAGAGAATCAGATCACAGTGTCGCTGATATTAAATTTGCAGAGGCCATTGGTTTAAAATTTTATGTCCCAGAAGAGTACTTCGCTTGA >Glyma12g18403.2 sequence type=CDS gene model=Glyma12g18403 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCTCCGAATCCCCAACTTCATCGCTGTCAACGTCCGTCACCGTCTCCGTAACTTCCCTAATCCTATTCCTTTCCTTCTCTCCGTTTCCGTCGCTGCATCTCTCCCTCCGTTACGGAACCGAAGCCCGTCACAGATGGCGGCTCGCGAATCGATGATGGCGGATTACGCGAAATCGGGGAAGTCGTCGTGCAGGGCGTGTTCCCAAAAGATCGAAGCGAAGGCATTGAGGCTGGCTTCGGTCTCCAAAGGAAATGGTCCGTACGACATCGTCAAGTGGCACCACCTCCGTTGCTTCCCTCTTTCCTCTCACTCTCACTCCTCTCCTGAGAGCATCAGAGGCTTTTCCTCCTTGAAGAGTAGTGACCAGGAAGCTCTGAAGAAGTTATTTGCTGAAAATAACAAGTCTGAAGAGAAGGTTAATGAAGCAGTGGAAGATGTACGAAATGAGCTGCAAGAGACTGGAGAGCGTGGTTCAAAGAGATTAAGGAGTAGTGACCAGGAAGCTCTGAAGAAGTTATTTGCTGAAAATAACAAGTCTGAAGAGAAGTTGTGCACACCTGATGTTAAAGCTGTGGTGAACATTAAATTTTCAGTTTCTGATGTCAAGAGCAATTACAAGGATGCTACCCTTTTACCAAAATGGAAGGCATTCCAAACAGTCATATTTCTTGAACGGGATGATGGTCTGCATGATTCAAGTAAAATCGCTGCATTTGATTTTGATGGATGTCTTGTAAAAACAGATGTGAAAAGAGTGGGTGCAGATGCTTGGTCCCTTATGCATTCGTCTATTCCTGATAAACTACAAAGCCTATACAATGATGGCTACAAGTTGGTAATTTTTACCAATGAATCCAATATTGAACGTTGGAAGAATAAGAGGCAAGTAGCTGTGGACTCGAAAATTGGACGTCTAAATAATTTTATTGTGAAAGTGAAGGTTCCAGTTCAGGTTTTTATAGCTTGTGGGGTAGGTAGTAAATCAGGTAAAGTAAACAAAAAGGAAGATGATCCTTTTCGCAAACCCAAACCAGGGATGTGGCATCTTATGGAGCAACACTTCAACTCTGGCATTGCCATTGATATGGATAAATCCTTTTTTGTTGGTGATGCAGCCGGGAGAGAATCAGATCACAGTGTCGCTGATATTAAATTTGCAGAGGCCATTGGTTTAAAATTTTATGTCCCAGAAGAGTACTTCGCTTGA >Glyma12g18403.3 sequence type=CDS gene model=Glyma12g18403 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCTCCGAATCCCCAACTTCATCGCTGTCAACGTCCGTCACCGTCTCCGTAACTTCCCTAATCCTATTCCTTTCCTTCTCTCCGTTTCCGTCGCTGCATCTCTCCCTCCGTTACGGAACCGAAGCCCGTCACAGATGGCGGCTCGCGAATCGATGATGGCGGATTACGCGAAATCGGGGAAGTCGTCGTGCAGGGCGTGTTCCCAAAAGATCGAAGCGAAGGCATTGAGGCTGGCTTCGGTCTCCAAAGGAAATGGTCCGTACGACATCGTCAAGTGGCACCACCTCCGTTGCTTCCCTCTTTCCTCTCACTCTCACTCCTCTCCTGAGAGCATCAGAGGCTTTTCCTCCTTGAAGAGTAGTGACCAGGAAGCTCTGAAGAAGTTATTTGCTGAAAATAACAAGTCTGAAGAGAAGTTGTGCACACCTGATGTTAAAGCTGTGGTGAACATTAAATTTTCAGTTTCTGATGTCAAGAGCAATTACAAGGATGCTACCCTTTTACCAAAATGGAAGGCATTCCAAACAGTCATATTTCTTGAACGGGATGATGGTCTGCATGATTCAAGTAAAATCGCTGCATTTGATTTTGATGGATGTCTTGTAAAAACAGATGTGAAAAGAGTGGGTGCAGATGCTTGGTCCCTTATGCATTCGTCTATTCCTGATAAACTACAAAGCCTATACAATGATGGCTACAAGTTGGTAATTTTTACCAATGAATCCAATATTGAACGTTGGAAGAATAAGAGGCAAGTAGCTGTGGACTCGAAAATTGGACGTCTAAATAATTTTATTGTGAAAGTGAAGGTTCCAGTTCAGGTTTTTATAGCTTGTGGGGTAGGTAGTAAATCAGGTAAAGTAAACAAAAAGGAAGATGATCCTTTTCGCAAACCCAAACCAGGGATGTGGCATCTTATGGAGCAACACTTCAACTCTGGCATTGCCATTGATATGGATAAATCCTTTTTTGTTGGTGATGCAGCCGGGAGAGAATCAGATCACAGTGTCGCTGATATTAAATTTGCAGAGGCCATTGGTTTAAAATTTTATGTCCCAGAAGAGTACTTCGCTTGA
>Glyma12g18403.1 sequence type=predicted peptide gene model=Glyma12g18403 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLRIPNFIAVNVRHRLRNFPNPIPFLLSVSVAASLPPLRNRSPSQMAARESMMADYAKSGKSSCRACSQKIEAKALRLASVSKGNGPYDIVKWHHLRCFPLSSHSHSSPESIRGFSSLKSSDQEALKKLFAENNKSEEKVNEAVEDVRNELQETGERGSKRLRSSDQEALKKLFAENNKSEEKLCTPDVKAVVNIKFSVSDVKSNYKDATLLPKWKAFQTVIFLERDDGLHDSSKIAAFDFDGCLVKTDVKRVGADAWSLMHSSIPDKLQSLYNDGYKLVIFTNESNIERWKNKRQVAVDSKIGRLNNFIVKVKVPVQVFIACGVGSKSGKVNKKEDDPFRKPKPGMWHLMEQHFNSGIAIDMDKSFFVGDAAGRESDHSVADIKFAEAIGLKFYVPEEYFA* >Glyma12g18403.2 sequence type=predicted peptide gene model=Glyma12g18403 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLRIPNFIAVNVRHRLRNFPNPIPFLLSVSVAASLPPLRNRSPSQMAARESMMADYAKSGKSSCRACSQKIEAKALRLASVSKGNGPYDIVKWHHLRCFPLSSHSHSSPESIRGFSSLKSSDQEALKKLFAENNKSEEKVNEAVEDVRNELQETGERGSKRLRSSDQEALKKLFAENNKSEEKLCTPDVKAVVNIKFSVSDVKSNYKDATLLPKWKAFQTVIFLERDDGLHDSSKIAAFDFDGCLVKTDVKRVGADAWSLMHSSIPDKLQSLYNDGYKLVIFTNESNIERWKNKRQVAVDSKIGRLNNFIVKVKVPVQVFIACGVGSKSGKVNKKEDDPFRKPKPGMWHLMEQHFNSGIAIDMDKSFFVGDAAGRESDHSVADIKFAEAIGLKFYVPEEYFA* >Glyma12g18403.3 sequence type=predicted peptide gene model=Glyma12g18403 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLRIPNFIAVNVRHRLRNFPNPIPFLLSVSVAASLPPLRNRSPSQMAARESMMADYAKSGKSSCRACSQKIEAKALRLASVSKGNGPYDIVKWHHLRCFPLSSHSHSSPESIRGFSSLKSSDQEALKKLFAENNKSEEKLCTPDVKAVVNIKFSVSDVKSNYKDATLLPKWKAFQTVIFLERDDGLHDSSKIAAFDFDGCLVKTDVKRVGADAWSLMHSSIPDKLQSLYNDGYKLVIFTNESNIERWKNKRQVAVDSKIGRLNNFIVKVKVPVQVFIACGVGSKSGKVNKKEDDPFRKPKPGMWHLMEQHFNSGIAIDMDKSFFVGDAAGRESDHSVADIKFAEAIGLKFYVPEEYFA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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