Glyma12g18230 - SoyBase

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Report for Sequence Feature Glyma12g18230

Feature Type:	gene_model
Chromosome:	Gm12
Start:	18808067
stop:	18810221
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g18230

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G14920	AT	Annotation by Michelle Graham. TAIR10: Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein \| chr3:5018275-5020104 FORWARD LENGTH=609	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0005774	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane	SoyBase	N/A	ISS
GO:0009505	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
PF12222	PFAM	Peptide N-acetyl-beta-D-glucosaminyl asparaginase amidase A	JGI		ISS
UniRef100_G7I5U3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A n=1 Tax=Medicago truncatula RepID=G7I5U3_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1LST9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LST9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma12g18230

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma12g18230 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g157500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g18230

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma12g18230

Limit To All Plant Sequences

>Glyma12g18230.1   sequence type=CDS   gene model=Glyma12g18230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACAATTATTTCCTCCTCTTCATCATCTTCCTCTCCCTCTTCCACCACCCCATTTCCGCATCAAATCTCCACAAACTCAAGCAACTCACTCCAAATTTCCCCCCTGAACCTTTATCCTCCAATGACCCTCCACCACCCACTGAATACTTTGAGGTAGCAAGACCCATTGAACACCCCAAAACAAAACCTTGCTCTCACCACATTCTCCACCACGACTTCGGCTACACCTATGGCCAGCCCCCAGTTCTCGCCACCTACACCCCTCCTTCTCATTGCCCCTTCAACACATTCTCCCAAATCGTGCTGGAATGGAAGGCCACTTGCAAAGGAAGACAATTTGACCGCATTTTCGGTGTGTGGCTTGGTGGGGTTGAGCTTCTTAGAAGTTGCACCGCAGAGCCAAGAGCCACTGGCATTGTTTGGAGTGTTGAAAAAGACATCACAAGGTACCACTCCTTGTTGCTAAGTCCCCAAAATCAAACCTTTGCTGTTTTTCTGGGGAACATTGTGGATAAAACCTACACTGGGGTTTACCTCGTTGATGTCACTATGCACTTTTTCCCTTTGGGATATGTTGATGGGTCAAGCTCAAAGGTTGGAGCTTCAGCATTTGGGGGTGGTGTCCATGCTGATTTGGTCCTGCCCATTTCTAGAAATCTTCCATTGAATGATGGGTTGTGGTTTGCTATTCAGAATTCCAGTGATGAGGGTTTGAAGGAGTTTAGGGTGCCCCAGAATGCCTATAGGGCTGTTTTGGAGGTTTATGTTTCATTTCATGAGAGGGATGAGTTTTGGTACTCTAACCCTCCTGATGAGTATCTTATTGCCAACAACCTCAGTGATGTGCCTGGGGGTGGTTCTTTTAGGGAGGTTGTGGTTTCTCTTGATGGGAATGTTGTTGGTGCCGTCTGGCCTTTTACTGTGATCTACACTGGAGGGGTTAATCCCCTCTTGTGGAGGCCTATTACCGGGATTGGCTCATTTGATCTTCCCTCATATGATATGGAGGTCACACCGCTTTTGGGGACCTTGTTGGATGGGAAGAGCCATTCGGTGGGGTTCAGTGTGTCGAACGCGATGAATGTTTGGTTTGTGGATGCAAATTTGCATATTTGGTTGGATGGGAAGAGCAGTAGGACAGAAGGAGGAGTTGTGGATCTTGTTGCCAAGCCTTTGGTTGAGTCTCTGGTGACTGACTTTGAAGGTTTGAACGGAAAGTTCTGGACTAGTGCAAGGAGGTCCATTTTGTCTGCTGGTTGGGTCAGATCCTCATATGGGAATGTTACTACCAGTTTTGTCCAAGATTTTGTTTTCAACAATTCAATGGTGATGGGAAAGAATGGGAATCAGCAAATTGTGAATCAAGTGATTCTTTTCAATGACAGTGTTCATGCTAACCTTCCATCACCCTTTGTTGAGGACACATACAGAAAATTTTCCCTATACTTGGACACTGATGAAGTGGATCAGGATGACGATACTTCTTTATCAGTTTCGAATGTTACATTGGGATTTGATGTGGACATGTTTAAGAGCTCGGCTTTTGGTTTTTCAAAGAGCTCTCTCAAAAATATGCAGGATGCTCAGGGTACTATGGTTATCAAAGGGAATTTGGTTGTTAGGGGATTGGCTGAAACACAGCAAGATTACAGTTACACAAGTGATGGATATTGCTATTCTAGGAAAGTTGGCAGCTCAAATTACACAATTCTCTACGATAAAGTCAGACATTCGTGTAACAAAAGAAGTCACTCTCATCTTGGTCCTCATTCTATCAAAAAGTTGTTCATTCTCTAG

Predicted protein sequences of Glyma12g18230

Limit To All Plant Sequences

>Glyma12g18230.1   sequence type=predicted peptide   gene model=Glyma12g18230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDNYFLLFIIFLSLFHHPISASNLHKLKQLTPNFPPEPLSSNDPPPPTEYFEVARPIEHPKTKPCSHHILHHDFGYTYGQPPVLATYTPPSHCPFNTFSQIVLEWKATCKGRQFDRIFGVWLGGVELLRSCTAEPRATGIVWSVEKDITRYHSLLLSPQNQTFAVFLGNIVDKTYTGVYLVDVTMHFFPLGYVDGSSSKVGASAFGGGVHADLVLPISRNLPLNDGLWFAIQNSSDEGLKEFRVPQNAYRAVLEVYVSFHERDEFWYSNPPDEYLIANNLSDVPGGGSFREVVVSLDGNVVGAVWPFTVIYTGGVNPLLWRPITGIGSFDLPSYDMEVTPLLGTLLDGKSHSVGFSVSNAMNVWFVDANLHIWLDGKSSRTEGGVVDLVAKPLVESLVTDFEGLNGKFWTSARRSILSAGWVRSSYGNVTTSFVQDFVFNNSMVMGKNGNQQIVNQVILFNDSVHANLPSPFVEDTYRKFSLYLDTDEVDQDDDTSLSVSNVTLGFDVDMFKSSAFGFSKSSLKNMQDAQGTMVIKGNLVVRGLAETQQDYSYTSDGYCYSRKVGSSNYTILYDKVRHSCNKRSHSHLGPHSIKKLFIL*

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