SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G19600 | AT | Annotation by Michelle Graham. TAIR10: K+ efflux antiporter 4 | chr2:8479275-8483482 FORWARD LENGTH=592 | SoyBase | E_val: 2.00E-94 | ISS |
| GO:0006812 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cation transport | SoyBase | N/A | ISS |
| GO:0006813 | GO-bp | Annotation by Michelle Graham. GO Biological Process: potassium ion transport | SoyBase | N/A | ISS |
| GO:0006814 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sodium ion transport | SoyBase | N/A | ISS |
| GO:0010351 | GO-bp | Annotation by Michelle Graham. GO Biological Process: lithium ion transport | SoyBase | N/A | ISS |
| GO:0055085 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transmembrane transport | SoyBase | N/A | ISS |
| GO:0016021 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane | SoyBase | N/A | ISS |
| GO:0015079 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: potassium ion transmembrane transporter activity | SoyBase | N/A | ISS |
| GO:0015299 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: solute:hydrogen antiporter activity | SoyBase | N/A | ISS |
| GO:0015386 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: potassium:hydrogen antiporter activity | SoyBase | N/A | ISS |
| PTHR16254 | Panther | POTASSIUM/PROTON ANTIPORTER-RELATED | JGI | ISS | |
| PF00999 | PFAM | Sodium/hydrogen exchanger family | JGI | ISS | |
| UniRef100_B9RKA1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Inner membrane protein ybaL, putative n=1 Tax=Ricinus communis RepID=B9RKA1_RICCO | SoyBase | E_val: 4.00E-106 | ISS |
| UniRef100_UPI000233D318 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233D318 related cluster n=1 Tax=unknown RepID=UPI000233D318 | SoyBase | E_val: 0 | ISS |
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Glyma12g17940 not represented in the dataset |
Glyma12g17940 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma12g17940.1 sequence type=CDS gene model=Glyma12g17940 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AATTTCACATATTGTGTTCATTCCTTGCACGTTGAGACAATTGCTCAATTTGGTGTCATCTTTTTGCTCTTTGCATTGGGCTTAGAGTTTTCAACAACAAAGCTTCGAGTTGTTCGAGCAGTGGCTATTCTTGGAGGCCTACTCCAAATTTTCTTATTTATGTGCTTGTGTGGAATAACGGCTTCATTATGTGGTGGTAAATCATCTGAACGAATATTTGTTGGTGCATTTCTATCCATGTCTTCAACAGTTGTGATGGTCGACGATCCAATGCTCAGGTCGTCGCTTCCCGCACCTCGAGTCGCTCAAGCCGCAATGTTCAGCTTGATTCCCGAGGATTGGGGCGAACATGTTAGTCCCTGGGTCAAAGAGATTTCTCAGTACTTCGATTGCCTCAAGAGCCTCCACTTCCGCCGCATGATTGTCAAGGATTCCGATCTTCAGAATCTCGCTCGTGACCGTGGTCACGTGCTTCATGCTCTCAAGCTTGACAAGTGCTTCAGTTTCACCACTGATGGTCTTTTCCATATCGGTCGCTTTTGCAAGTTGGTGATCTTAATTGCATTTTTGGCCATTTTGACCATATTATCTTGTACTTGTGTGCCATGGCTCCTTAAAGCTTATGATAAGCTTATCCTCTCAGACCATGAACTTTATCAGTTGGCATCAGTGGCATTCTGCCTACTTGTTGCTTGGCTGGGTTTAAGCCTTGAACTAGATTCCTTTGCTACGGGAGTGATGATATCAACAACAGATCTTGGTCAACATACACTGGAACAAGTTGAGCCAATTCGCAACTTTTTTGCTGCTCTGTTCTTGGCCAGCATTGGGATGCTTATACATGTCCATTTCCTTTGGAATCATGTTGACATTTTACTAGCAGTTGTTATATTGGTGATCATTATAAAAACAATTGTAACTATATCTGTTGTCAAGGGGTTTGGATACAACAACAAGACTTCACTTCTT
>Glyma12g17940.1 sequence type=predicted peptide gene model=Glyma12g17940 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high NFTYCVHSLHVETIAQFGVIFLLFALGLEFSTTKLRVVRAVAILGGLLQIFLFMCLCGITASLCGGKSSERIFVGAFLSMSSTVVMVDDPMLRSSLPAPRVAQAAMFSLIPEDWGEHVSPWVKEISQYFDCLKSLHFRRMIVKDSDLQNLARDRGHVLHALKLDKCFSFTTDGLFHIGRFCKLVILIAFLAILTILSCTCVPWLLKAYDKLILSDHELYQLASVAFCLLVAWLGLSLELDSFATGVMISTTDLGQHTLEQVEPIRNFFAALFLASIGMLIHVHFLWNHVDILLAVVILVIIIKTIVTISVVKGFGYNNKTSLL
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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