SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G20650 | AT | Annotation by Michelle Graham. TAIR10: mRNA capping enzyme family protein | chr3:7221168-7223939 REVERSE LENGTH=370 | SoyBase | E_val: 3.00E-90 | ISS |
| GO:0006370 | GO-bp | Annotation by Michelle Graham. GO Biological Process: 7-methylguanosine mRNA capping | SoyBase | N/A | ISS |
| GO:0015824 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proline transport | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0004482 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: mRNA (guanine-N7-)-methyltransferase activity | SoyBase | N/A | ISS |
| PTHR12189 | Panther | MRNA (GUANINE-7-)METHYLTRANSFERASE | JGI | ISS | |
| PF03291 | PFAM | mRNA capping enzyme | JGI | ISS | |
| UniRef100_I1KEC8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: mRNA cap guanine-N7 methyltransferase n=1 Tax=Glycine max RepID=I1KEC8_SOYBN | SoyBase | E_val: 8.00E-100 | ISS |
| UniRef100_I1LSR1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LSR1_SOYBN | SoyBase | E_val: 8.00E-114 | ISS |
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Glyma12g17211 not represented in the dataset |
Glyma12g17211 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.12g139600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma12g17211.1 sequence type=CDS gene model=Glyma12g17211 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGATTGCTGAATTAAATGTAAATGAAGTTCACACAAATTTTGTGTTACTTAGTTTCAGCATGGTGGTGTACAACTTTCTTGAGGATGAAATCACCAAGATTCTGAAAGTAGCAGATCATTACAGTGCAAGATCCAACCAGACTTTGAAAGAACGGGAGGCTAGTCCGATAATTCATTTGAAGAAACTCAATAACTGGGTTCGCTTGGACAAAGTTCTTGTAGATGATGCTCCTTTTGATATTTGTAGTTGCCAGTTTGCATTGCATTACTCATGGTCTATAGAGGCCCGTGCCCGGCAAGCATTGGCTAATGTGTCAGCTTTACTTCACCCAGGAGGCATTTTCATTGGAACTATGCCTGATGCCAATGTGAATATCAAGAAGCTTAGAGAAGCTGAAGGATTAACTTTTGGTAACAGGGTCTATTGGGTGCGTTTTGATGAAGAATTTTCTGATAATAAATTTAAATCTTCCAGCCCTTTTGGAATAAAGTACACGTTCCATTTGGAGGACGCTGTTGATTGTCCTAAATGGATTGTCCTCTTCCACATATTCAAGTCATTAGCTGAAGGATTTTCTAAAGCTAGTATTGCATTGCAAAGGCTTGTTCTTCTAGACTACTCATTTAAACTTTATATGAAAAAACCGGAATTTGTGGAGCTCATGGGAAGACTTGATGCATTGGGAGATGGCAACCAAGATCAAAGTACAGTCTCCGCTGATGAATGGGAGGCAGCATATTTATAA
>Glyma12g17211.1 sequence type=predicted peptide gene model=Glyma12g17211 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEIAELNVNEVHTNFVLLSFSMVVYNFLEDEITKILKVADHYSARSNQTLKEREASPIIHLKKLNNWVRLDKVLVDDAPFDICSCQFALHYSWSIEARARQALANVSALLHPGGIFIGTMPDANVNIKKLREAEGLTFGNRVYWVRFDEEFSDNKFKSSSPFGIKYTFHLEDAVDCPKWIVLFHIFKSLAEGFSKASIALQRLVLLDYSFKLYMKKPEFVELMGRLDALGDGNQDQSTVSADEWEAAYL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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