Glyma12g16940 - SoyBase

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Report for Sequence Feature Glyma12g16940

Feature Type:	gene_model
Chromosome:	Gm12
Start:	16588450
stop:	16592310
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g16940

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G23960	AT	Annotation by Michelle Graham. TAIR10: terpene synthase 21 \| chr5:8092969-8095128 FORWARD LENGTH=545	SoyBase	E_val: 5.00E-109	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0016106	GO-bp	Annotation by Michelle Graham. GO Biological Process: sesquiterpenoid biosynthetic process	SoyBase	N/A	ISS
GO:0051762	GO-bp	Annotation by Michelle Graham. GO Biological Process: sesquiterpene biosynthetic process	SoyBase	N/A	ISS
GO:0080027	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to herbivore	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0000287	GO-mf	Annotation by Michelle Graham. GO Molecular Function: magnesium ion binding	SoyBase	N/A	ISS
GO:0010333	GO-mf	Annotation by Michelle Graham. GO Molecular Function: terpene synthase activity	SoyBase	N/A	ISS
GO:0016829	GO-mf	Annotation by Michelle Graham. GO Molecular Function: lyase activity	SoyBase	N/A	ISS
GO:0080016	GO-mf	Annotation by Michelle Graham. GO Molecular Function: (-)-E-beta-caryophyllene synthase activity	SoyBase	N/A	ISS
GO:0080017	GO-mf	Annotation by Michelle Graham. GO Molecular Function: alpha-humulene synthase activity	SoyBase	N/A	ISS
PF01397	PFAM	Terpene synthase, N-terminal domain	JGI		ISS
PF03936	PFAM	Terpene synthase family, metal binding domain	JGI		ISS
UniRef100_G7KA52	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: (+)-delta-cadinene synthase isozyme A n=1 Tax=Medicago truncatula RepID=G7KA52_MEDTR	SoyBase	E_val: 3.00E-171	ISS
UniRef100_UPI000233D1BC	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233D1BC related cluster n=1 Tax=unknown RepID=UPI000233D1BC	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma12g16940

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma12g16940 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g138600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g16940

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma12g16940

Limit To All Plant Sequences

>Glyma12g16940.2   sequence type=CDS   gene model=Glyma12g16940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATTGTATCTCCTATTGATAACAATTTCTCTTTTAAATTAAACTTTATCGACTCGATACAGCGTTTGGGTGTTTCTTACCATTTTGAACACGAAATTGATCGAGCATTGCATCAAATTTATGACATTTCAACAAAGGACAATAATATCATAAGTCATGATAATGATCTTCATCACGTGGCTTTACTTTTTCGATTGCTTAGACAACATGGATATCGCATTTCATCAGGTGTATTTTTCAAATTCAAGGACCAAACTGGAAAGTTCAATGAAAGGCTAGCAAATGATATACAAGGAATGTTGAGCTTGTATGAAGCAGCCCAACTAAGATTTCATGGAGAAGAGATACTTGAAGAAATCCCCTCACATAATGAAAGTTTGTTAACCTTTGCAAAACTAGATTTTAATATGTTGCAAAAGCTACATCAAATAGAAGTCAGTAGTATGACCAAGTGGTGGGTTAAAGATTTGAATGTCTCAACAAAATTTCCTTTTGTGCGGGATAGGATTGTAGAATGTTGCTTTTGGATTTTAGGGGTCTACATTGAGCCACAATATTCTCTTGCTAGAAGAATAATGATGAAAGTAATTGCCATATCATCCATCATTGATGATGTGTATGATTCCTATGGAACCATTGATGAGCTAGAGATTTTCACCGATGCAATTGAGAGGTGGGATATTTGCTCATTGGTTGATCTCCCAGAATACATGAAATTATGCTATTCGGCACTTTTAGATGTCTTTGAAGAAACAGAGCAAGAAATGAGAAAGCAAGGAAAAACACACTTCGTCAAGTATGCTAAAAATGAAATAAAAAGACTAGTCCAAGCATACATTACCGAAGCAAGATGGTTTCATTGCAACCACACACCAACAATGGAGGAGTACATGCAAGTTGCGACTATGTCATGTGGTTTTGCTATGCTGACAATTGTATCTTTCCTTGGAATGGAAGACACAACAGAGGAGGTTCTCATATGGGCGACAAGTGACCCAAAAATTGTTGCAGCGGCTTCAATTATTTCTAGGCTCATGGATGACATTGTTGGAAGTGAGTATGAACAAGAAAGAGGACATGTGGTTTCAAGCCTTGATTGCTATATGAAGCAACATAATACCTCAAGGCAAGATACCATTGAAGAACTACTAAAGTTGGTTGAGAGTGCTTGGAAGGACATTAATGCAGCTTGTCTTAATCCTACTCAAGTACCAATGAAATTTCTTATGCGTGTTGTCAACCTTGCGCGCATGATGGATGTGCTTTACAAAGATGAAGATAGTTATACAAATGCAGGGGGAATAATGAAAGATTACATCAAAATTTTACTAGTTAATAAGATATTTGATTAA

Predicted protein sequences of Glyma12g16940

Limit To All Plant Sequences

>Glyma12g16940.2   sequence type=predicted peptide   gene model=Glyma12g16940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIVSPIDNNFSFKLNFIDSIQRLGVSYHFEHEIDRALHQIYDISTKDNNIISHDNDLHHVALLFRLLRQHGYRISSGVFFKFKDQTGKFNERLANDIQGMLSLYEAAQLRFHGEEILEEIPSHNESLLTFAKLDFNMLQKLHQIEVSSMTKWWVKDLNVSTKFPFVRDRIVECCFWILGVYIEPQYSLARRIMMKVIAISSIIDDVYDSYGTIDELEIFTDAIERWDICSLVDLPEYMKLCYSALLDVFEETEQEMRKQGKTHFVKYAKNEIKRLVQAYITEARWFHCNHTPTMEEYMQVATMSCGFAMLTIVSFLGMEDTTEEVLIWATSDPKIVAAASIISRLMDDIVGSEYEQERGHVVSSLDCYMKQHNTSRQDTIEELLKLVESAWKDINAACLNPTQVPMKFLMRVVNLARMMDVLYKDEDSYTNAGGIMKDYIKILLVNKIFD*

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