Glyma12g16580 - SoyBase

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Report for Sequence Feature Glyma12g16580

Feature Type:	gene_model
Chromosome:	Gm12
Start:	15959206
stop:	15965600
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g16580

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G54670	AT	Annotation by Michelle Graham. TAIR10: kinesin 3 \| chr5:22209912-22213843 FORWARD LENGTH=754	SoyBase	E_val: 0	ISS
GO:0000226	GO-bp	Annotation by Michelle Graham. GO Biological Process: microtubule cytoskeleton organization	SoyBase	N/A	ISS
GO:0000911	GO-bp	Annotation by Michelle Graham. GO Biological Process: cytokinesis by cell plate formation	SoyBase	N/A	ISS
GO:0007018	GO-bp	Annotation by Michelle Graham. GO Biological Process: microtubule-based movement	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0003777	GO-mf	Annotation by Michelle Graham. GO Molecular Function: microtubule motor activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0008017	GO-mf	Annotation by Michelle Graham. GO Molecular Function: microtubule binding	SoyBase	N/A	ISS
GO:0016887	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATPase activity	SoyBase	N/A	ISS
KOG0239	KOG	Kinesin (KAR3 subfamily)	JGI		ISS
PTHR24115	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24115:SF170	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00225	PFAM	Kinesin motor domain	JGI		ISS
PF07111	PFAM	Alpha helical coiled-coil rod protein (HCR)	JGI		ISS
UniRef100_G7JF36	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Kinesin-3 n=1 Tax=Medicago truncatula RepID=G7JF36_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1LSN9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LSN9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma12g16580

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g16580

Paralog	Evidence	Comments
Glyma06g41600	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g16580 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g136600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g16580

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma12g16580

Limit To All Plant Sequences

>Glyma12g16580.1   sequence type=CDS   gene model=Glyma12g16580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTCACCAAAAACCAGAACCGGCCTCCATTATCACTCACATCCACACCACCACCTCCTTCAAATTCAAAGAATTTTGAGGGTGATGTGCTCCTCCTAGACAATAAAGAGCAAAGAGTTGGAGCAGAAAAAATGGTGGGGACTCCAATTAATGGAAGAACAAGGCAAGCTTTCACAGTTGTCAATGGCGGTGTCCACGATCTTGGCCCCAGTAGTGCCCCTCCAAGCAATGCTGGATCGGACTATGGTGTCATAGAGTTCACAAGAGAGGATGTGGAAGCATTGCTAAGTGAGAAAGCCAAGAGAAAGGACAGATTTAATTATAAGGAACGATGTGAAAATATGATGGATTATATAAAAAGGCTTAAGGTTTGCATCAGATGGTTCCAAGACCTTGAGATGTACTACTCTCTAGAGCAGGAAAAGTTAAAGAATTCACTGGAACTGACCCAGCAAAAATGCATAGAAATTGAGTTGCTGCTTAAAATCAAGGAAGAAGAATTAAATTCAATTATCTCGGAAATGAGAAGGAATTGCACTTCCTTACAAGAAAAATTGATAAAGGAAGAAACAGAAAAGTCGGCTGCAGCGGAATCTCTTGTTAAAGAGAGAGAAGCTAGGCTTGACATTGAGAGGTCACATAGTACTCTGTCAGAGGACCTTGGAAGAGCCCAACGAGATATGCAAAGTGCAAATCAGAAGATAGCATCACTCAATGAAATGTATAAGCGGTTACAGGATTACATTACAAGCTTACAACAGTACAATGGAAAACTTCATTCTGAGCTTTCGTCGGTTGAGGATGAACTTAAACGCGTAGAAAAAGAGAAGGCTACTATAGTGGAGAACATCACCATGTTAAGGGGTCAACTTACTATATCCGTTTCTTCTCAAGAGGAGGCTATAAAACAGAAGGATGTCTTGGCTACAGAAGTTTCCTCTCTTAGAGGAGAGTTGCAACAAGTAAGAGATGAGCGAGACCGGCAATTATCTCAAGTACAAACTTTAAGTTCTGAATTAGAGAAAGTTAAAGAATCTAAGAAACACTCCTCCACTGAATTGGACAGCTTGACCTTAAAAGCTAATGATCTGGAGGAAAAATGTTCTTTGAAAGATAATCAGATAAAGGCATTGGAAGAGCAACTAGCAACTGCAGAGAAGAAATTGCAGGTGTCTAATATATCTGCATACGAGACAAGGACAGAGTACGAAGGACAACAAAAATTTGTTAATGAGTTACAAAGACGCTTAGCAGATGCAGAATATAAACTTATAGAAGGGGAGAGGCTGAGGAAAAAATTACATAATACCATTTTGGAGTTAAAAGGGAACATTCGTGTATTCTGTCGAGTGAGGCCTTTATTAGCTGATGAAAGTTGTAGCACAGAAGGCAAGATTTTCAGTTATCCAACATCAATGGAAACTTCTGGACGAGCCATTGACCTAGCCCAAAATGGCCAAAAACATTCTTTTACATTTGATAAAGTTTTTACACCAGAGGCATCACAAGAAGAAGTTTTTCTAGAAATTTCACAGCTTGTACAAAGTGCTCTTGATGGTTACAAGGTTTGCATCTTTGCCTATGGTCAGACAGGGTCAGGGAAAACCTATACAATGATGGGAAGGCCTGGACATCCAGAGGAGAAGGGCTTGATACCTCGTTCATTAGAGCAAATATTTCAAACAAAGCAGTCTCAGCAACCTCAAGGCTGGAAATATGAAATGCAGGTGTCAATGTTGGAAATATACAATGAAACGATCCGTGATCTGATATCTACAACAACACGCATGGAAAATGGTACTCCTGGAAAACAATATACAATCAAACATGACGCAAATGGAAATACACAAGTTTCTGATCTCACAGTAGTGGATGTTCATAGTGCTAAAGAGGTTGCATTTCTTTTAAATCAAGCTGCAAATAGCAGATCTGTGGGTAAAACCCAGATGAATGAACAATCATCAAGAAGTCATTTTGTATTCACTCTTCGAATATACGGTGTAAATGAGAGCACTGACCAACAAGTACAAGGTGTTCTGAACCTCATTGATCTAGCTGGTAGCGAGCGGCTTTCAAAGAGTGGATCAACCGGGGACCGGTTGAAAGAAACTCAAGCAATCAACAAAAGTTTATCATCACTGAGTGATGTTATATTCGCCTTAGCCAAGAAGGAGGATCATGTGCCATTCAGGAACTCAAAGCTTACATATCTCCTTCAGCCTTGTCTAGGTGGAGACTCTAAGACACTAATGTTTGTGAACATTTCACCTGATCCTTCTTCAATTGGCGAGTCACTATGCTCACTCAGGTTTGCATCAAGAGTCAATGCTTGTGAGATTGGAACACCTCGGCGTCAAACTAATGGACGTTCAATAGAGTCTCGCTTGAGCTATTTCTAA

Predicted protein sequences of Glyma12g16580

Limit To All Plant Sequences

>Glyma12g16580.1   sequence type=predicted peptide   gene model=Glyma12g16580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVTKNQNRPPLSLTSTPPPPSNSKNFEGDVLLLDNKEQRVGAEKMVGTPINGRTRQAFTVVNGGVHDLGPSSAPPSNAGSDYGVIEFTREDVEALLSEKAKRKDRFNYKERCENMMDYIKRLKVCIRWFQDLEMYYSLEQEKLKNSLELTQQKCIEIELLLKIKEEELNSIISEMRRNCTSLQEKLIKEETEKSAAAESLVKEREARLDIERSHSTLSEDLGRAQRDMQSANQKIASLNEMYKRLQDYITSLQQYNGKLHSELSSVEDELKRVEKEKATIVENITMLRGQLTISVSSQEEAIKQKDVLATEVSSLRGELQQVRDERDRQLSQVQTLSSELEKVKESKKHSSTELDSLTLKANDLEEKCSLKDNQIKALEEQLATAEKKLQVSNISAYETRTEYEGQQKFVNELQRRLADAEYKLIEGERLRKKLHNTILELKGNIRVFCRVRPLLADESCSTEGKIFSYPTSMETSGRAIDLAQNGQKHSFTFDKVFTPEASQEEVFLEISQLVQSALDGYKVCIFAYGQTGSGKTYTMMGRPGHPEEKGLIPRSLEQIFQTKQSQQPQGWKYEMQVSMLEIYNETIRDLISTTTRMENGTPGKQYTIKHDANGNTQVSDLTVVDVHSAKEVAFLLNQAANSRSVGKTQMNEQSSRSHFVFTLRIYGVNESTDQQVQGVLNLIDLAGSERLSKSGSTGDRLKETQAINKSLSSLSDVIFALAKKEDHVPFRNSKLTYLLQPCLGGDSKTLMFVNISPDPSSIGESLCSLRFASRVNACEIGTPRRQTNGRSIESRLSYF*

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