SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G54730 | AT | Annotation by Michelle Graham. TAIR10: homolog of yeast autophagy 18 (ATG18) F | chr5:22233977-22236804 REVERSE LENGTH=763 | SoyBase | E_val: 6.00E-165 | ISS |
| GO:0016036 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular response to phosphate starvation | SoyBase | N/A | ISS |
| GO:0019375 | GO-bp | Annotation by Michelle Graham. GO Biological Process: galactolipid biosynthetic process | SoyBase | N/A | ISS |
| GO:0042594 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to starvation | SoyBase | N/A | ISS |
| GO:0042631 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular response to water deprivation | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG2109 | KOG | WD40 repeat protein | JGI | ISS | |
| PTHR13268 | Panther | BREAST CARCINOMA AMPLIFIED SEQUENCE 3 | JGI | ISS | |
| PF00400 | PFAM | WD domain, G-beta repeat | JGI | ISS | |
| PF12490 | PFAM | Breast carcinoma amplified sequence 3 | JGI | ISS | |
| UniRef100_B9SA15 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Breast carcinoma amplified sequence, putative n=1 Tax=Ricinus communis RepID=B9SA15_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233D057 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233D057 related cluster n=1 Tax=unknown RepID=UPI000233D057 | SoyBase | E_val: 0 | ISS |
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Glyma12g16540 not represented in the dataset |
Glyma12g16540 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma06g41647 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.12g136000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma12g16540.2 sequence type=CDS gene model=Glyma12g16540 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGTAAGAATGATGGCCAGAAACCACAGCATCTTCTTCTTGGAGGTGTTGCAGCTGCTGCTGCTGGCAGTGGTAGCGGTGGCAGAACCAACAACAATGGATTTATTCCCTCCTTTCGTACTCTCTCTGGTTACCTGAAGATTGTTTCATCTGGTGCTTCTACTGTTGCTCGGTCTGCGGCTTCCTCTTTTGCATCGTCGATTTTGGATAAGGTTGATGCTGCTGACTGTGATCGGGTTATTTGGGCTGGGTTTGACACATTAGAGGGCCAGGGAGAAGTCATGCGGCAAATACTTCTTCTAGGCTATTGGTCCGGTTTCCAGGTTTGGGATGTTAATGATTCAAATAATGTCCGTGACCTAGTTTCCCGACAGGATGGTCCTGTTTCTTTTATGCAAATGGTACCAACTCCAATTGTATCAAAGAGACCAGAGGATAAGTATGCAGGCAAGCATCCATTGTTGGTAATTTGTATGGATGGTGGAGGCAAAACACAAGATGGGTTGGGTGCCACTTGCAAAGGGGGCACTTTAAACCATCATGACCAAGTGAATGGGAACTATCTGCCAACTACTGTTCAATTTTATTCTATGAGGTCCCAATCATATGTTCATGTACTAAAGTTTAGATCAGTTGTTTACTCTGTAAGATGTAGTTCTCGAATAGTAGCTGTTTCTCAAGCCACTCAGATACACTGTTTTTCTGCCACAACTTTAGAAAGAGAGTATACTTTACTTACCAATCCTATAGTCACACCTTGTTTTGGTTCTGGAGGCATTGGCTTTGGACCGCTTGCAGTTGGTCCTAGATGGCTGGCCTATAGTGGAAGCCCAGATGCAACAGCCACTTCTGGACGTGTCCGCCCACAGCATTTGACACCTTCTGCAAGCTTTCCTGGTATTTCTTCAAATGTGAGCTTGGTCGCTCACTATGCCAAAGAGTCTAGCAAGCATCTTGCTGCTGGGATTGTGACACTTGGAGATATGGGGTATAAAAAACTTTCCAGATACTGTTCGGAACTTCGCCCAGATAGCAGCAGTTCTATACAATTGGTAAATTCTAGCCCAAAAGGAAATGGAATCGTTAATGGCCATTCAACAGATGCAGATAACATTGGGATGGTCATTGTCCGAGATATAGTCAGTAAAAATGTCGTTTCCCAATTCCGGGCCCACAAGAGTCCTATTTCAGCTTTATGCTTTGATCCTAGTGGCACCATATTGGTGACTGCCTCTGTTCAGGGGCACAATATTAATGTTTTTAAGATAATCCCTGGATATGAGAGAGTGTCAGCATCTGATGCTGGCCCTTCTTATGTTCATCTCTACAGGCTGCAACGTGGCTTGACAAATGCAGTTATTCAAGATATCAGTTTTAGTGCTGATAGCAGGTGGATTATGATTAGTTCCTCAAGGGGCACTAGCCATCTATTTGCTATAAACCCTCAAGGGGGACCTGTAAATATTCTGTCATGTGACAATAGTTTAACAGAAAAAAATGGTGGATTGGATGTCATGAATAATCAAGCAGTTTGTTGGCCTCATAGTTCAGCCTTAGAAATTTGTAAACCACAGAGCCTCTGTACTGCTGGTCCTCCTATCACACTTTCTGTCGTAAGCAGAATTAGGAATGGATCTAATGGCTGGAGAAGCACGGTAACTGGTGCTGCTGCAGCTGCAACAAATAGGATGAGTTCCCTTTCTGGGGCTATTGCTTCATCTTTCCGTAACTTTGAAGGCAACAGTACCTTGTTTGTTAATGGGAACTATTCCAAGGAAAAGTGTCATCTGTTGGTATTTTCACCCACCGGTTCTATGATACAATATGCTCTGCAGACAATTAACAGTCAAGATTCAGGTGTTGTTTCTGGAGTAACACCTGCGTATGAATCTGCCCCAGCGACTGATGTAAGAGTAGTTGTTGAGCCTATCAAGAAATGGAATATAAGTCAGAGACAAAGTTGGAGAGAGGGAGAAGATAATATTGACATATATGGAGAGAATGTAGTTTCAGACAGCAATAAATTATATTCAGAGGAAGTGAAGAAGGATAATATCATTAGCCCTAAAATGAAGAATGTAGCTGTGAAATGGAATTCCTGTTCTGAGAAAGAGCATCAGTTATATATTTCAGAAGCTGAACTGCAAATGCATCAAGCTAAGACACCATTGTGGGGAAAGACTGGGATATATTTTCATTCAGTGGGTAAAGAGGCTATTCTGATGATGGATGAAGAAGCTGCTTCTGGAGGGGAATTTGAGATTGACAAGATTCCAACTCGTGTAATACAAGCTAGGTCAAAAGACTTGGTTCCAATTTTTGATTATATTCAGACCTCAAAATTTCAACAAATAAGGACTCCTGCTGTGGGTAACGTGTTATATGAACAGCTTCTGCGTCAAAGTTCCTTTGAAAATGGAAGGATTTCAACCAGGGGTTTTTTGAGTTCTCCTGATTGCATACCTAATTCCGAATTTAAAAGTATGATTGAAGGAAGTGAGTGGGGTGATAGTTTGCTTTCAGCAAAAACAAAGGCTTTCGTAAATAAAAACAACACCCTTAAACCAAATACTTGGCCAGAGATTGCAAATAATAGAAGAGAGAACTTAAACATGAATGCTCATCAAATCTTTGTAAATAGTGACAGAAAAGGCCTGAAACTGGAGAATCACTGCAAAGAAAAAGGAGATGAATTTGATTGA
>Glyma12g16540.2 sequence type=predicted peptide gene model=Glyma12g16540 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSKNDGQKPQHLLLGGVAAAAAGSGSGGRTNNNGFIPSFRTLSGYLKIVSSGASTVARSAASSFASSILDKVDAADCDRVIWAGFDTLEGQGEVMRQILLLGYWSGFQVWDVNDSNNVRDLVSRQDGPVSFMQMVPTPIVSKRPEDKYAGKHPLLVICMDGGGKTQDGLGATCKGGTLNHHDQVNGNYLPTTVQFYSMRSQSYVHVLKFRSVVYSVRCSSRIVAVSQATQIHCFSATTLEREYTLLTNPIVTPCFGSGGIGFGPLAVGPRWLAYSGSPDATATSGRVRPQHLTPSASFPGISSNVSLVAHYAKESSKHLAAGIVTLGDMGYKKLSRYCSELRPDSSSSIQLVNSSPKGNGIVNGHSTDADNIGMVIVRDIVSKNVVSQFRAHKSPISALCFDPSGTILVTASVQGHNINVFKIIPGYERVSASDAGPSYVHLYRLQRGLTNAVIQDISFSADSRWIMISSSRGTSHLFAINPQGGPVNILSCDNSLTEKNGGLDVMNNQAVCWPHSSALEICKPQSLCTAGPPITLSVVSRIRNGSNGWRSTVTGAAAAATNRMSSLSGAIASSFRNFEGNSTLFVNGNYSKEKCHLLVFSPTGSMIQYALQTINSQDSGVVSGVTPAYESAPATDVRVVVEPIKKWNISQRQSWREGEDNIDIYGENVVSDSNKLYSEEVKKDNIISPKMKNVAVKWNSCSEKEHQLYISEAELQMHQAKTPLWGKTGIYFHSVGKEAILMMDEEAASGGEFEIDKIPTRVIQARSKDLVPIFDYIQTSKFQQIRTPAVGNVLYEQLLRQSSFENGRISTRGFLSSPDCIPNSEFKSMIEGSEWGDSLLSAKTKAFVNKNNTLKPNTWPEIANNRRENLNMNAHQIFVNSDRKGLKLENHCKEKGDEFD*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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