Glyma12g16380 - SoyBase

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Report for Sequence Feature Glyma12g16380

Feature Type:	gene_model
Chromosome:	Gm12
Start:	15573890
stop:	15577552
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g16380

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G54770	AT	Annotation by Michelle Graham. TAIR10: thiazole biosynthetic enzyme, chloroplast (ARA6) (THI1) (THI4) \| chr5:22246634-22247891 FORWARD LENGTH=349	SoyBase	E_val: 7.00E-166	ISS
GO:0000023	GO-bp	Annotation by Michelle Graham. GO Biological Process: maltose metabolic process	SoyBase	N/A	ISS
GO:0006974	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to DNA damage stimulus	SoyBase	N/A	ISS
GO:0009228	GO-bp	Annotation by Michelle Graham. GO Biological Process: thiamine biosynthetic process	SoyBase	N/A	ISS
GO:0009409	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cold	SoyBase	N/A	ISS
GO:0009637	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to blue light	SoyBase	N/A	ISS
GO:0010155	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of proton transport	SoyBase	N/A	ISS
GO:0018131	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxazole or thiazole biosynthetic process	SoyBase	N/A	ISS
GO:0019252	GO-bp	Annotation by Michelle Graham. GO Biological Process: starch biosynthetic process	SoyBase	N/A	ISS
GO:0042742	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to bacterium	SoyBase	N/A	ISS
GO:0043085	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of catalytic activity	SoyBase	N/A	ISS
GO:0046777	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein autophosphorylation	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0009579	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: thylakoid	SoyBase	N/A	ISS
GO:0009941	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope	SoyBase	N/A	ISS
GO:0010319	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: stromule	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
GO:0042803	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein homodimerization activity	SoyBase	N/A	ISS
KOG2960	KOG	Protein involved in thiamine biosynthesis and DNA damage tolerance	JGI		ISS
PTHR10617	Panther	FLAVOPROTEIN-UBIQUINONE OXIDOREDUCTASE	JGI		ISS
PTHR10617:SF54	Panther	THIAZOLE BIOSYNTHETIC ENZYME, MITOCHONDRIAL	JGI		ISS
PF01946	PFAM	Thi4 family	JGI		ISS
UniRef100_I1LSM3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LSM3_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9SLR9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Thiamin biosynthetic enzyme n=1 Tax=Glycine max RepID=Q9SLR9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma12g16380

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma12g16380 not represented in the dataset	Glyma12g16380 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g16380

Paralog	Evidence	Comments
Glyma06g42080	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g16380 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g135000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g16380

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma12g16380

Limit To All Plant Sequences

>Glyma12g16380.2   sequence type=transcript   gene model=Glyma12g16380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAATGATAAGTTGCCACGTGTCCTCCATGCATTCTCTAGAAACCCGTTCTCCTAAAGCAGTACTTTCAAACTTTCCAATTTTGTTCAAGTCCCATCCATAAATATCTAACTCCGTTGTTTCCTCACTCACTCCACTCACCACTGAAACTGAAACAAACATGGCTTCTTCCACCATCACCTCCTCCTTCCTCACATCACACCCTTCATCCCTCTTCAACAAATCATCATCTTCATCATTCCCCTCCTTCCATGCCACCCCCACTCTCCGCCCCCACAGGCCACGCGCCTCCATGTCCGCGGCAGCGCCACCGCCGCCCTACGACTTCGGCTCGTTCCGGTTCGAGCCGATTAGGGAGTCGATCGTGTCGCGCGAGATGACCCGCAGGTACATGACCGACATGGTCACCCACGCCGACACCGACGTCGTCGTCGTCGGCGCAGGCTCCGCGGGTCTCTCGTGCGCCTACGAGCTCTCCAAAAACCCCTCCGTCAATATCGCCATAGTCGAGCAGTCCGTCAGCCCCGGCGGCGGCGCCTGGCTCGGCGGCCAACTCTTCTCTGCCATGGTAGTGCGTAAGCCCGCACACCTCTTCCTAGACGAGCTTGGTCTTGAGTATGACGAACAAGACAACTACGTGGTGATCAAGCACGCTGCATTGTTCACTTCCACCATCATGAGCAAGCTCTTGGCCAGGCCAAACGTGAAGCTCTTCAACGCCGTGGCGGCCGAGGACTTGATTGTGAAGAACGGGAGAGTTGGTGGGGTGGTGACAAACTGGGCCTTGGTTTCAATGAACCATGACACTCAATCCTGCATGGACCCCAATGTGATGGAGGCTAAGGTGGTGGTGAGTTCTTGTGGCCATGATGGACCCTTTGGCGCCACTGGGGTGAAGAGGCTCAAGAGCATTGGGTTGATTGATAGTGTGCCAGGGATGAAAGCCCTTGACATGAACAAGGCAGAGGATGCCATTGTGAAGCTCACTAGGGAGGTTGTGCCTGGCATGATTGTTACTGGGATGGAAGTTGCTGAGATTGATGGTGCTCCAAGGATGGGTCCAACATTTGGAGCAATGATGATTTCAGGGCAGAAAGCAGCCCATCTGGCTTTGAGATCATTGGGACTTCCCAATGCTTTGGATTCTGTAGGAAACGTTCATCCTGAGCTTGTCCTAGCTGCTGCTGAATCTGCTGAAATTGCAGACGCTTAATTAATGTTGCAACAAATTTAAGTTAAAATATCAGTGCTTGCAACTAGAACTACTACTTGTAGCTAGGGCATTAAGCTTTGCCGGTGTTGGCCGTGATCTATTGGGGTGGTTGATGTGACTCTTCTACGAAGTTTGTTAATAATATGAAGGTTTGAAGGTATGGGTAGGGTACCATCCACACCTTTGTCTCAAGTTTTATATTTTGTTCAATTTATTTTATTTTAAATTTTTAAAAAAGACAATGAAGTAATTGATGCGATATTATTGTTCTCATTTTATTTGAAAAATCTCTAATAAGGACCTTAAAAAGGTATTGATCGAAAATGATTAAAAAATGTCCTTTTTAATTAAAGGAGTATTCCTCTAA

Coding sequences of Glyma12g16380

Limit To All Plant Sequences

>Glyma12g16380.1   sequence type=CDS   gene model=Glyma12g16380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCTTCCACCATCACCTCCTCCTTCCTCACATCACACCCTTCATCCCTCTTCAACAAATCATCATCTTCATCATTCCCCTCCTTCCATGCCACCCCCACTCTCCGCCCCCACAGGCCACGCGCCTCCATGTCCGCGGCAGCGCCACCGCCGCCCTACGACTTCGGCTCGTTCCGGTTCGAGCCGATTAGGGAGTCGATCGTGTCGCGCGAGATGACCCGCAGGTACATGACCGACATGGTCACCCACGCCGACACCGACGTCGTCGTCGTCGGCGCAGGCTCCGCGGGTCTCTCGTGCGCCTACGAGCTCTCCAAAAACCCCTCCGTCAATATCGCCATAGTCGAGCAGTCCGTCAGCCCCGGCGGCGGCGCCTGGCTCGGCGGCCAACTCTTCTCTGCCATGGTAGTGCGTAAGCCCGCACACCTCTTCCTAGACGAGCTTGGTCTTGAGTATGACGAACAAGACAACTACGTGGTGATCAAGCACGCTGCATTGTTCACTTCCACCATCATGAGCAAGCTCTTGGCCAGGCCAAACGTGAAGCTCTTCAACGCCGTGGCGGCCGAGGACTTGATTGTGAAGAACGGGAGAGTTGGTGGGGTGGTGACAAACTGGGCCTTGGTTTCAATGAACCATGACACTCAATCCTGCATGGACCCCAATGTGATGGAGGCTAAGGTGGTGGTGAGTTCTTGTGGCCATGATGGACCCTTTGGCGCCACTGGGGTGAAGAGGCTCAAGAGCATTGGGTTGATTGATAGTGTGCCAGGGATGAAAGCCCTTGACATGAACAAGGCAGAGGATGCCATTGTGAAGCTCACTAGGGAGGTTGTGCCTGGCATGATTGTTACTGGGATGGAAGTTGCTGAGATTGATGGTGCTCCAAGGATGGTAAAATTCTATTATCACTTGATGATACTCTTGTGCCACTTGTTCAATTTGGGATTTTTCTTTTTAATTTTTTTAAGGATGATAAAATTTGAGATTGATGGTGCTCCAAGAATGGTAAAATTTTTACCTTTTGATATTCATAGACACTTCGTCTTTTTTGAGAATTGA

>Glyma12g16380.2   sequence type=CDS   gene model=Glyma12g16380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCTTCCACCATCACCTCCTCCTTCCTCACATCACACCCTTCATCCCTCTTCAACAAATCATCATCTTCATCATTCCCCTCCTTCCATGCCACCCCCACTCTCCGCCCCCACAGGCCACGCGCCTCCATGTCCGCGGCAGCGCCACCGCCGCCCTACGACTTCGGCTCGTTCCGGTTCGAGCCGATTAGGGAGTCGATCGTGTCGCGCGAGATGACCCGCAGGTACATGACCGACATGGTCACCCACGCCGACACCGACGTCGTCGTCGTCGGCGCAGGCTCCGCGGGTCTCTCGTGCGCCTACGAGCTCTCCAAAAACCCCTCCGTCAATATCGCCATAGTCGAGCAGTCCGTCAGCCCCGGCGGCGGCGCCTGGCTCGGCGGCCAACTCTTCTCTGCCATGGTAGTGCGTAAGCCCGCACACCTCTTCCTAGACGAGCTTGGTCTTGAGTATGACGAACAAGACAACTACGTGGTGATCAAGCACGCTGCATTGTTCACTTCCACCATCATGAGCAAGCTCTTGGCCAGGCCAAACGTGAAGCTCTTCAACGCCGTGGCGGCCGAGGACTTGATTGTGAAGAACGGGAGAGTTGGTGGGGTGGTGACAAACTGGGCCTTGGTTTCAATGAACCATGACACTCAATCCTGCATGGACCCCAATGTGATGGAGGCTAAGGTGGTGGTGAGTTCTTGTGGCCATGATGGACCCTTTGGCGCCACTGGGGTGAAGAGGCTCAAGAGCATTGGGTTGATTGATAGTGTGCCAGGGATGAAAGCCCTTGACATGAACAAGGCAGAGGATGCCATTGTGAAGCTCACTAGGGAGGTTGTGCCTGGCATGATTGTTACTGGGATGGAAGTTGCTGAGATTGATGGTGCTCCAAGGATGGGTCCAACATTTGGAGCAATGATGATTTCAGGGCAGAAAGCAGCCCATCTGGCTTTGAGATCATTGGGACTTCCCAATGCTTTGGATTCTGTAGGAAACGTTCATCCTGAGCTTGTCCTAGCTGCTGCTGAATCTGCTGAAATTGCAGACGCTTAA

Predicted protein sequences of Glyma12g16380

Limit To All Plant Sequences

>Glyma12g16380.1   sequence type=predicted peptide   gene model=Glyma12g16380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASSTITSSFLTSHPSSLFNKSSSSSFPSFHATPTLRPHRPRASMSAAAPPPPYDFGSFRFEPIRESIVSREMTRRYMTDMVTHADTDVVVVGAGSAGLSCAYELSKNPSVNIAIVEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGLEYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKNGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGLIDSVPGMKALDMNKAEDAIVKLTREVVPGMIVTGMEVAEIDGAPRMVKFYYHLMILLCHLFNLGFFFLIFLRMIKFEIDGAPRMVKFLPFDIHRHFVFFEN*

>Glyma12g16380.2   sequence type=predicted peptide   gene model=Glyma12g16380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASSTITSSFLTSHPSSLFNKSSSSSFPSFHATPTLRPHRPRASMSAAAPPPPYDFGSFRFEPIRESIVSREMTRRYMTDMVTHADTDVVVVGAGSAGLSCAYELSKNPSVNIAIVEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGLEYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKNGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGLIDSVPGMKALDMNKAEDAIVKLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALRSLGLPNALDSVGNVHPELVLAAAESAEIADA*

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