SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G27080 | AT | Annotation by Michelle Graham. TAIR10: PDI-like 5-4 | chr4:13589156-13593335 FORWARD LENGTH=480 | SoyBase | E_val: 0 | ISS |
| GO:0019932 | GO-bp | Annotation by Michelle Graham. GO Biological Process: second-messenger-mediated signaling | SoyBase | N/A | ISS |
| GO:0045454 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell redox homeostasis | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005783 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum | SoyBase | N/A | ISS |
| GO:0003756 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein disulfide isomerase activity | SoyBase | N/A | ISS |
| KOG2667 | KOG | COPII vesicle protein | JGI | ISS | |
| PTHR10984 | Panther | SEROLOGICALLY DEFINED BREAST CANCER ANTIGEN NY-BR-84-RELATED | JGI | ISS | |
| PTHR10984:SF2 | Panther | UNCHARACTERIZED | JGI | ISS | |
| PF07970 | PFAM | Endoplasmic reticulum vesicle transporter | JGI | ISS | |
| UniRef100_G7JDV5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Endoplasmic reticulum-Golgi intermediate compartment protein n=2 Tax=Medicago truncatula RepID=G7JDV5_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233D051 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233D051 related cluster n=1 Tax=unknown RepID=UPI000233D051 | SoyBase | E_val: 0 | ISS |
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Glyma12g16311 not represented in the dataset |
Glyma12g16311 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.12g134500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma12g16311.1 sequence type=CDS gene model=Glyma12g16311 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATTTCTGCTACTAAACTCAAATCTGTCGATTTTTACAGGAAAATCCCGAGAGATTTGACTGAGGCGTCGTTATCAGGGGCGGGATTATCCATAGTGGCAGCTCTGGTTATGATGTTTTTATTTGGAATGGAACTAAGTAGTTATATGTCTGTTAGCACCTCCACATCTGTGATTGTTGACAAGAGTTCTGATGGTGACTATTTACGTATCGATTTCAATATCAGGCTCAATATAACGAAAACAGTTCGTAAGTTTTCTATGGATTCAAATTTAAGACCCACTGGTGCTGAGTTTCATTCGGGTACAGTTGCAAATGCTGTAAAGCATGATGATGAAGTAGATGAAGAATCTGTTGAAGGTTCTGTTTCACTCACAACACATAATTTTGATAAATATGTTCATCAGTTTCCAGTTACGATTGTAAATTTTTATGCACCTTGGTGTTCCTGGAATCACATACAAGGGTATCCATCTATTCGAATCTTTCGTAAAGGTAGTGATCTCAGAAGTGAACATGGGCATCATGAACACGAGTCCTATTATGGAGATCGAGATACAGAAAGCCTAGTCAAGTTTATGGAGGATTTAGTCACATCTCTCCCAACAGAATCTCAAAAGCTAGCTCTGGAGGATAAATCTAATGCTGCAGACAATGCAAAAAGGCCAGCACCATCAGCAGGTGGATGTAGAGTAGAGGGATATGTGCGTGTGAAAAAGGTTCCAGGAAATTTGATCATCTCAGCTAGATCAGACGCCCATTCTTTTGATGCTTCTCAAATGAACATGTCACATGTCATAAACAACTTGTCTTTTGGAAAGAAAGTGACTCCTAGGGCCATGAGTGATGTGAAGCTCTTGATACCATACATAGGTAGCAGCCATGACAGGCTCAACGGCCGGTCATTCATCAATACTCGTGATTTAGGTGCCAATGTTACTATAGAGCATTATATTCAGATAGTTAAAACTGAGGTAGTGACTAGGAAAGGTTATAAATTAATTGAGGAGTACGAGTACACAGCGCACAGCAGTGTGGCACACAGTCTGGACATTCCTGTTGCGAAGTTTCATCTTGAGCTCTCCCCCATGCAGGTCTTAATAACAGAAAACCAGAGGTCTTTTTCACATTTTATTACAAATGTCTGTGCCATTATTGGGGGTGTTTTCACGGTAGCTGGAATTTTGGACTCGATTCTGCACAACACTATAAGAATGGTGAAAAAAATTGAGCTTGGCAAAAATTTTTGA
>Glyma12g16311.1 sequence type=predicted peptide gene model=Glyma12g16311 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MISATKLKSVDFYRKIPRDLTEASLSGAGLSIVAALVMMFLFGMELSSYMSVSTSTSVIVDKSSDGDYLRIDFNIRLNITKTVRKFSMDSNLRPTGAEFHSGTVANAVKHDDEVDEESVEGSVSLTTHNFDKYVHQFPVTIVNFYAPWCSWNHIQGYPSIRIFRKGSDLRSEHGHHEHESYYGDRDTESLVKFMEDLVTSLPTESQKLALEDKSNAADNAKRPAPSAGGCRVEGYVRVKKVPGNLIISARSDAHSFDASQMNMSHVINNLSFGKKVTPRAMSDVKLLIPYIGSSHDRLNGRSFINTRDLGANVTIEHYIQIVKTEVVTRKGYKLIEEYEYTAHSSVAHSLDIPVAKFHLELSPMQVLITENQRSFSHFITNVCAIIGGVFTVAGILDSILHNTIRMVKKIELGKNF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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