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Report for Sequence Feature Glyma12g15980

Feature Type:gene_model
Chromosome:Gm12
Start:14998555
stop:14999641
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma12g15980
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G66180AT Annotation by Michelle Graham. TAIR10: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr5:26448952-26450429 FORWARD LENGTH=323 SoyBaseE_val: 6.00E-35ISS
GO:0006487GO-bp Annotation by Michelle Graham. GO Biological Process: protein N-linked glycosylation SoyBaseN/AISS
GO:0048573GO-bp Annotation by Michelle Graham. GO Biological Process: photoperiodism, flowering SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
PTHR22807Panther NOP2(YEAST)-RELATED NOL1/NOP2/FMU(SUN) DOMAIN-CONTAINING JGI ISS
PTHR22807:SF18Panther SUBFAMILY NOT NAMED JGI ISS
UniRef100_G7LC16UniRef Annotation by Michelle Graham. Most informative UniRef hit: Ribosomal RNA small subunit methyltransferase, putative n=1 Tax=Medicago truncatula RepID=G7LC16_MEDTR SoyBaseE_val: 4.00E-44ISS
UniRef100_I1JCG2UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JCG2_SOYBN SoyBaseE_val: 6.00E-65ISS

Expression Patterns of Glyma12g15980
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma12g15980 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.12g133200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma12g15980
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma12g15980
>Glyma12g15980.1   sequence type=CDS   gene model=Glyma12g15980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGAAGAACACGCGACAAAGGTGCCACTACCGGACGCTTTCCTTCAGTTCCTGGAGACCAACGGGCTCGACCCTTCCATTTACACTGCTATTGATTCCACCCCACGATACATTCGGTTGAAACCCGGTTTCGAATCATGTATTGAAGAGTGGTTACTGGGATTTTACTTTCTTCCACCTCACGTTCAAATTGCTGGTTCTAGGGCATACCGAGAAGGGAAGATATATGGAATTGATGCAGCTTTTGGAGCTGTAGTTATGGCTTTAAATACCTGGGGATCATGTTCTCGACCTGTGTGCTACTCCTGGATGTTGTTTTTTTTACATTTTCAGTTATTCCTAGTGGATTTTGTTCTGACTACAAATCATGTAATTGGAGTTTATGTTGTTTCTGGGTTGGAAGGAAGAGTGGATGTGTTCAAGGAGTGGACATCTAGAAGACCATGGAAAGAGAGGAAAAAGGCAAATAAAAGTGGTACTGCATATAATTTTTTGAGTTTTCATTATAATGATCTTTTTAATAAACCTGTTGACAGTGTCTAG
Predicted protein sequences of Glyma12g15980
>Glyma12g15980.1   sequence type=predicted peptide   gene model=Glyma12g15980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEEEHATKVPLPDAFLQFLETNGLDPSIYTAIDSTPRYIRLKPGFESCIEEWLLGFYFLPPHVQIAGSRAYREGKIYGIDAAFGAVVMALNTWGSCSRPVCYSWMLFFLHFQLFLVDFVLTTNHVIGVYVVSGLEGRVDVFKEWTSRRPWKERKKANKSGTAYNFLSFHYNDLFNKPVDSV*






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