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Report for Sequence Feature Glyma12g15971

Feature Type:gene_model
Chromosome:Gm12
Start:14994201
stop:14995165
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma12g15971
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G35020AT Annotation by Michelle Graham. TAIR10: N-acetylglucosamine-1-phosphate uridylyltransferase 2 | chr2:14756803-14760477 FORWARD LENGTH=502 SoyBaseE_val: 7.00E-37ISS
GO:0006011GO-bp Annotation by Michelle Graham. GO Biological Process: UDP-glucose metabolic process SoyBaseN/AISS
GO:0006047GO-bp Annotation by Michelle Graham. GO Biological Process: UDP-N-acetylglucosamine metabolic process SoyBaseN/AISS
GO:0008152GO-bp Annotation by Michelle Graham. GO Biological Process: metabolic process SoyBaseN/AISS
GO:0019276GO-bp Annotation by Michelle Graham. GO Biological Process: UDP-N-acetylgalactosamine metabolic process SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0003977GO-mf Annotation by Michelle Graham. GO Molecular Function: UDP-N-acetylglucosamine diphosphorylase activity SoyBaseN/AISS
GO:0003983GO-mf Annotation by Michelle Graham. GO Molecular Function: UTP:glucose-1-phosphate uridylyltransferase activity SoyBaseN/AISS
GO:0016779GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotidyltransferase activity SoyBaseN/AISS
GO:0052630GO-mf Annotation by Michelle Graham. GO Molecular Function: UDP-N-acetylgalactosamine diphosphorylase activity SoyBaseN/AISS
PTHR11952Panther UDP- GLUCOSE PYROPHOSPHORYLASE JGI ISS
PTHR11952:SF2Panther UDP-N-ACTEYLGLUCOSAMINE PYROPHOSPHORYLASE 1 JGI ISS
UniRef100_D7LHR5UniRef Annotation by Michelle Graham. Most informative UniRef hit: UTP--glucose-1-phosphate uridylyltransferase family protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7LHR5_ARALL SoyBaseE_val: 1.00E-34ISS
UniRef100_I1K362UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K362_SOYBN SoyBaseE_val: 2.00E-48ISS

Expression Patterns of Glyma12g15971
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma12g15971 not represented in the dataset
Glyma12g15971 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma12g15971 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.12g133100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma12g15971
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma12g15971
>Glyma12g15971.1   sequence type=CDS   gene model=Glyma12g15971   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGGGAGCCATCACCGGTGGGATTCGAAGGCAACGACGTTGTTCCGCCGCAAGCTCTCCTCCAGAGACTGAAAGACTACGATCAAGAACACGCTTTCGCCCTCTGTTTAGATCTTTCAAGAATTGACCGGATTATTCAATGTTCGCTGCGATCTCAAGGACTGCCGGTGGTGGCCATTGAGCCTGTGCCGGAGAGCAGTGTGTCGACGGTGGTGGAGAGAAGTCAAGAGGATCGAGAGAGATGGTGGAAAATGGGATTGAAGGCCATTTTTGATGGCAAATTAGCTGTGTTGCTTTTATCTGGTGGCCAGTTCTCCAACAATGATTTTGAAAGTTCACCTTCCACAGGCTTGGCCTCACCATCAGCAATACTGTAG
Predicted protein sequences of Glyma12g15971
>Glyma12g15971.1   sequence type=predicted peptide   gene model=Glyma12g15971   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MREPSPVGFEGNDVVPPQALLQRLKDYDQEHAFALCLDLSRIDRIIQCSLRSQGLPVVAIEPVPESSVSTVVERSQEDRERWWKMGLKAIFDGKLAVLLLSGGQFSNNDFESSPSTGLASPSAIL*






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