Glyma12g15940 - SoyBase

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Report for Sequence Feature Glyma12g15940

Feature Type:	gene_model
Chromosome:	Gm12
Start:	14940072
stop:	14945076
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g15940

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G23410	AT	Annotation by Michelle Graham. TAIR10: fatty alcohol oxidase 3 \| chr3:8382860-8386024 FORWARD LENGTH=746	SoyBase	E_val: 0	ISS
GO:0006066	GO-bp	Annotation by Michelle Graham. GO Biological Process: alcohol metabolic process	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0043231	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular membrane-bounded organelle	SoyBase	N/A	ISS
GO:0009055	GO-mf	Annotation by Michelle Graham. GO Molecular Function: electron carrier activity	SoyBase	N/A	ISS
GO:0016614	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on CH-OH group of donors	SoyBase	N/A	ISS
GO:0046577	GO-mf	Annotation by Michelle Graham. GO Molecular Function: long-chain-alcohol oxidase activity	SoyBase	N/A	ISS
GO:0050660	GO-mf	Annotation by Michelle Graham. GO Molecular Function: flavin adenine dinucleotide binding	SoyBase	N/A	ISS
KOG1238	KOG	Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family)	JGI		ISS
PTHR10668	Panther	PHYTOENE DEHYDROGENASE	JGI		ISS
PTHR10668:SF14	Panther	PHYTOENE DEHYDROGENASE	JGI		ISS
PF00732	PFAM	GMC oxidoreductase	JGI		ISS
PF05199	PFAM	GMC oxidoreductase	JGI		ISS
UniRef100_B5WWZ8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Long-chain-alcohol oxidase FAO1 n=1 Tax=Lotus japonicus RepID=FAO1_LOTJA	SoyBase	E_val: 0	ISS
UniRef100_I1LSK5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LSK5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma12g15940

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g15940

Paralog	Evidence	Comments
Glyma06g42400	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g15940 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g132800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g15940

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma12g15940

Limit To All Plant Sequences

>Glyma12g15940.1   sequence type=CDS   gene model=Glyma12g15940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACCAGAAAAGAGTGTCATCCATTGTTAAGGGGTGGGAGAGGGGATAGCAAATATAAACATGGATTTTCTGCAGCTGAGATGGAGTCACTGGCAAGCATATGTGAGGTTGTGTTGCCTCCTTTGCCTATGGATGCTCTTAAGATCAGAAAGGAAGACCAAATTGATGATTATGATTCTAGCAAGAGTCTCAAGTCCTTCTGGGACATTTCTGCTTCTCGCTATCCAATCCCTCATGAGGTTGCTGAGATGTTAACGAAGAGGAGCTTAATTGAAGCAGTAATACTGATTAGAGTAGTTTTATGGCTGCTGGCAACAAGGTTGGGAACCTTGTTGCTCTGTGGTTTCCTCTGTCTTGGTGAAAAATGGCCCTATGTCAACAACTTCTCAAACATATCTTTGGAGAAAAGAGAAATGGTTATGCAGAAGTGGCTGAAACATAGGTTCCTCACACCTATTAGACTGGCCTTTGCTTACATCAAAGTCTTGTGTCTCTTTGTTTTTTTCTCTTGGGTTGATGAAAATGGTGACAACCCAGCATGGAAAGCCATTGGATATGAGGTACCAGCTGATGAAAACTTGACCAATGCCTCCAAAACTAGGCCCCTTGAAAAGGGGATTATAGAAACCATGAATGAATCTGACTCCGCTCTTCAACAATCTCTTGCTAACAAAGGCCTTAATGTTACACTGGACTCAAAAAGCAACATCCTCAAAGTCAAATGTGATGCACTAGTTGTTGGTTCTGGTTGTGGAGGAGGTGTTGCGGCTGCTGTTCTTTCAAGTGCTGGCTACAAGGTGGTTGTTCTTGAGAAAGGAAACTATTTTTCTACTCAGGATTATTCATCTCTAGAAGGTCCTTCCATGAATCAACTATATGAAACTGGAGGGATCCTTGCTTCTGTGGACTCAAGAGTGCTAGTTTTGGCAGGATCAACAGTGGGTGGTGGCTCTGCTGTTAATTGGTCAGCCTGCATTAAGACCCCACACAAGGTGCTAAATGAGTGGTCTGAGAATCACAAGCTTCCCTTCTTTTCAAGCCAAGAATATCTCTCCGCAATGGAAACTGTGTGTGAAAGGATTGGTGTAACAGAAAACTGTACACAAGAGGGATTCCAAAACCAAGTGCTGAGAAAAGGGTGTCAAAATCTTGGCCTCAAAGTTGACTATGTGCCAAGAAACTCCTCAGGGAATCACTACTGTGGCTCATGTGGTTATGGCTGTCCGAAAGGAGAGAAACAAGGGACTCAAGCTACATGGCTTGTAGATGCAGTTGAAAGAGATGCAGTAATAATAACAGGATGCAAAGCTGAGAGGTTCTTGTTGGAAAGCAACAGGAGTGGAAATGGCAGAAAGAAGAAATGTTTGGGAGTGATGGCAAAAGCATTAAACAGCAGAGTCACAATGAAGTTACAAATTGAGGCCAAGGTGACAATTTCTGCAGGTGGGGCACTTTTGACACCCCCTTTGTTAATCTCTAGTGGACTAAAAAACAAGAACATAGGTAAAAACCTTCATCTCCACCCTGTGCTAATGACATGGGGATACTTTCCAGAATCAAATGATTCAGAATTCAAAGGAAAAGTCTACGAGGGAGGTATAATAACATCAGTCCACAAAGTGCCATCAACAGACTCCAATTCAGATTCAAGGGCAATAATTGAAACCCCTTCGCTAGGACCAGCTTCCTTTGCAGCACTGTGTCCTTGGGAGTCAGGACTAGACTTTAAGGAAAGAATGCTGAATTACCCTAGAACTTCACATTTGATAACAATAATAAGAGACATGGCTTGTGGACAGGTATCAACAGAAGGAAGGATCAGCTACAAGCTGAATGAAATTGACAAGGAGAACATGAAGGCTGGCTTGAAACAAGCACTGAAGATTCTTATAGCTGCAGGAGCAGTTGAGGTAGGTACACACAGAAGTGATGGTCAGAGACTTAAGTGTGATGGCATTGGTGAAAATGAAGTGCAAGAGTTCTTGGACAGTGTGTGTCCAATGGAGGGGGCACTTTCACCAGGTGAGTATTGGAACATATATTCTTCTGCACATCAAATGGGGAGCTGCAGAATGGGAGTCAATGAGAAAGAAGGTGCAGTTGATGAAAATGGTGAGACATGGGAGGCTGAAGGGTTGTTTGTTTGTGATGCTAGTGTGCTTCCAAGTGCTGTTGGTGTCAATCCCATGATCACGGTCCAATCAACTGCATACTGCATCTCTAATAGAATAGCAGATTATCTTAGAAGGGATTAA

Predicted protein sequences of Glyma12g15940

Limit To All Plant Sequences

>Glyma12g15940.1   sequence type=predicted peptide   gene model=Glyma12g15940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTRKECHPLLRGGRGDSKYKHGFSAAEMESLASICEVVLPPLPMDALKIRKEDQIDDYDSSKSLKSFWDISASRYPIPHEVAEMLTKRSLIEAVILIRVVLWLLATRLGTLLLCGFLCLGEKWPYVNNFSNISLEKREMVMQKWLKHRFLTPIRLAFAYIKVLCLFVFFSWVDENGDNPAWKAIGYEVPADENLTNASKTRPLEKGIIETMNESDSALQQSLANKGLNVTLDSKSNILKVKCDALVVGSGCGGGVAAAVLSSAGYKVVVLEKGNYFSTQDYSSLEGPSMNQLYETGGILASVDSRVLVLAGSTVGGGSAVNWSACIKTPHKVLNEWSENHKLPFFSSQEYLSAMETVCERIGVTENCTQEGFQNQVLRKGCQNLGLKVDYVPRNSSGNHYCGSCGYGCPKGEKQGTQATWLVDAVERDAVIITGCKAERFLLESNRSGNGRKKKCLGVMAKALNSRVTMKLQIEAKVTISAGGALLTPPLLISSGLKNKNIGKNLHLHPVLMTWGYFPESNDSEFKGKVYEGGIITSVHKVPSTDSNSDSRAIIETPSLGPASFAALCPWESGLDFKERMLNYPRTSHLITIIRDMACGQVSTEGRISYKLNEIDKENMKAGLKQALKILIAAGAVEVGTHRSDGQRLKCDGIGENEVQEFLDSVCPMEGALSPGEYWNIYSSAHQMGSCRMGVNEKEGAVDENGETWEAEGLFVCDASVLPSAVGVNPMITVQSTAYCISNRIADYLRRD*

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