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Report for Sequence Feature Glyma12g15890

Feature Type:gene_model
Chromosome:Gm12
Start:14900591
stop:14901712
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma12g15890
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G14480AT Annotation by Michelle Graham. TAIR10: Protein kinase superfamily protein | chr4:8330081-8331544 REVERSE LENGTH=487 SoyBaseE_val: 5.00E-99ISS
GO:0006468GO-bp Annotation by Michelle Graham. GO Biological Process: protein phosphorylation SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0004672GO-mf Annotation by Michelle Graham. GO Molecular Function: protein kinase activity SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0016301GO-mf Annotation by Michelle Graham. GO Molecular Function: kinase activity SoyBaseN/AISS
GO:0016772GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups SoyBaseN/AISS
PTHR24361Panther MITOGEN-ACTIVATED KINASE KINASE KINASE JGI ISS
PTHR24361:SF72Panther JGI ISS
PF00069PFAM Protein kinase domain JGI ISS
UniRef100_A2Q436UniRef Annotation by Michelle Graham. Most informative UniRef hit: Protein kinase n=1 Tax=Medicago truncatula RepID=A2Q436_MEDTR SoyBaseE_val: 2.00E-103ISS
UniRef100_I1LSK4UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1LSK4_SOYBN SoyBaseE_val: 2.00E-157ISS

Expression Patterns of Glyma12g15890
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma12g15890 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.12g132600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma12g15890
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma12g15890
>Glyma12g15890.2   sequence type=CDS   gene model=Glyma12g15890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACTCTGCCGCCGTCGCAATCAAATCCATCAAACTCAACCGCTCCCGGCCTGACTTAGACGATGTCCGTTGCGAGGCCAAAACCCCATCCCTCCTTTCCTACCCCAACATCCTCAAAGCACATTGTTCCTTCACAGTGGATCGCTGCCTCTGGGTGGTGATGTCGTTCATGGCCGCAGGATCACTTCAATCCATCATTTATCATTCCCACCCCAACGGCTTAATGGAGCCCTACATCACCGTGGTTCTCAGAGACACGCTCAACGCGCTCTCCTACCTCCACTGCCAGCATCTCCATAGAGACATTAAAGTCGGTAACATCCTCATTTACACCAATGGGCAAGTGAAGCTTGCTGATTTCGGTGTCTCCGCTTCCATATACGAGTCCACCACCACCACCACCACGTCTTCTTCTTCGTCTCTGAAGTTCACTAATGTTGTCGGCACGCCCTATTGGATGGCTCCTGAGGTGATTCACTCACACACAGGTTACAGTTTCGAGGCTGATATATGGTCTTTTGGGATAACCGCGTTGGAGCTTGCGCATGGAAGGCCTCCTCTCTCGCACCTTCCACCTTCCAAGTTCATGATGCTCAAGATCACCAAGAGGTTTCCTTTCTCCGATGATTTCGATGACAAGGAAAATATGATAACACAATTAAAGAATGCACAGAGGCATTAG
Predicted protein sequences of Glyma12g15890
>Glyma12g15890.2   sequence type=predicted peptide   gene model=Glyma12g15890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNSAAVAIKSIKLNRSRPDLDDVRCEAKTPSLLSYPNILKAHCSFTVDRCLWVVMSFMAAGSLQSIIYHSHPNGLMEPYITVVLRDTLNALSYLHCQHLHRDIKVGNILIYTNGQVKLADFGVSASIYESTTTTTTSSSSSLKFTNVVGTPYWMAPEVIHSHTGYSFEADIWSFGITALELAHGRPPLSHLPPSKFMMLKITKRFPFSDDFDDKENMITQLKNAQRH*






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