Glyma12g15870 - SoyBase

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Report for Sequence Feature Glyma12g15870

Feature Type:	gene_model
Chromosome:	Gm12
Start:	14883556
stop:	14885461
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g15870

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G54010	AT	Annotation by Michelle Graham. TAIR10: UDP-Glycosyltransferase superfamily protein \| chr5:21919819-21921180 REVERSE LENGTH=453	SoyBase	E_val: 2.00E-145	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0016757	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups	SoyBase	N/A	ISS
GO:0016758	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring hexosyl groups	SoyBase	N/A	ISS
KOG1192	KOG	UDP-glucuronosyl and UDP-glucosyl transferase	JGI		ISS
PTHR11926	Panther	GLUCOSYL/GLUCURONOSYL TRANSFERASES	JGI		ISS
PTHR11926:SF77	Panther	GLYCOSYLTRANSFERASE FAMILY PROTEIN	JGI		ISS
PF00201	PFAM	UDP-glucoronosyl and UDP-glucosyl transferase	JGI		ISS
UniRef100_E9M5F1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Glycosyltransferase GT10J15 n=1 Tax=Pueraria montana var. lobata RepID=E9M5F1_PUEML	SoyBase	E_val: 0	ISS
UniRef100_I1LSK3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LSK3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma12g15870

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma12g15870 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g132500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g15870

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma12g15870

Limit To All Plant Sequences

>Glyma12g15870.1   sequence type=CDS   gene model=Glyma12g15870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGCAGATGCAGCTCCTTTGCACATAGCAATGTATCCATGGTTTGCTATGGGGCACCTCACCCCATTTCTCCACCTTGCCAACAAGTTAGCCAAAAGGGGACACAAAATCTCCTTCTTCATACCCAGAAGAACACAAGCCAAGTTAGAAGACCTCAATCTTCACCCAAACCTCATCACCTTTGTCCCCATCAATGTTCCTCACGTTGATGGTCTTCCTTATGATGCAGAAACCACTTCAGATGTTCCCTCCTCTTTGTTCCCACTCATTGCCACTGCCATGGACCTCACAGAGAAAAACATTGAACTTCTCCTCCTTGATCTCAAACCACACATCGTTTTGTTCGATTTTTCCACATATTGGCTACCAAACTTGGCTCGTAGAATAGGAATAAAGTCTCTTCAGTACTGGATTATTAGCCCTGCAACAGTAGGGTACATGGCATCCCCAGCTAGACAAAGAGAAGATGACATGAGAAAACCACCTTCAGGGTTCCCTGATTGTTCCATCAAGCTGCATGCACATGAAGTTCGGTTCCTTGCTGCAGCAAGGAAACTAGAGTTTGGCAATGGTGTTCTTTTCTATGATCGTATCTCAGTTGGTGCAGATTTGTCTGATGCTATTGGATTCAAAGGTTGTAGAGAAATTGAAGGGCCTTATGTGGACTATCTAGAGACACAATTTGGTAAGCCCGTTTTGCTTACAGGTCCTCTTGTGCCCGAGCCATCAAATTCAACTTTGGACGCAAAATGGGGTGAATGGCTTGGTAGATTCAAAGCTGGTTCAGTGATTTACATTGCATTTGGAAGTGAACACTCTTTGCAGCAAAACCAATTGAATGAGTTGTTGTTGGGTCTTGAGCTAACAGGAATGCCATTTTTTGCAGCACTTAAGCCCCCTATTGAGTTTGAGTCCATTGAGAAAGCTCTCCCAAAAGGGTTCAAAGAAAGGGTTCAAGAAAGAGGGGTTGTGTATGGGGGGTGGGTGCAGCAACAGTTGATCTTGGCACACCCTTCTGTTGGGTGCTTCATAACTCACTGTGGTGGAGCTTCTCTAACTGAGGCACTTGTGAACCGGTGTCAGTTGGTGCTGTTGCCACGACTTGGTTCCGATTTCATCATCAATGCAAGAACCATGGGGGGAAAATTGAGGGTTGGTGTGGAAGTTGAGAAAGGGGAAGAAGATGGTTTGTTCACAAAGGAAAGTGTGTGTAAAGCTGTGAAAACTGTTATGGATGATGAGATTGATCAGCTTGGCAGAGAAGTCAGAGCAAATCACAACAAAGTGAGGAGCCTCTTGCTAAGTAACAATTTCGAGACATCTTGTGTAGATGCTTTCAGCCACAGGCTTCAGGATTTAGTCTAA

Predicted protein sequences of Glyma12g15870

Limit To All Plant Sequences

>Glyma12g15870.1   sequence type=predicted peptide   gene model=Glyma12g15870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDADAAPLHIAMYPWFAMGHLTPFLHLANKLAKRGHKISFFIPRRTQAKLEDLNLHPNLITFVPINVPHVDGLPYDAETTSDVPSSLFPLIATAMDLTEKNIELLLLDLKPHIVLFDFSTYWLPNLARRIGIKSLQYWIISPATVGYMASPARQREDDMRKPPSGFPDCSIKLHAHEVRFLAAARKLEFGNGVLFYDRISVGADLSDAIGFKGCREIEGPYVDYLETQFGKPVLLTGPLVPEPSNSTLDAKWGEWLGRFKAGSVIYIAFGSEHSLQQNQLNELLLGLELTGMPFFAALKPPIEFESIEKALPKGFKERVQERGVVYGGWVQQQLILAHPSVGCFITHCGGASLTEALVNRCQLVLLPRLGSDFIINARTMGGKLRVGVEVEKGEEDGLFTKESVCKAVKTVMDDEIDQLGREVRANHNKVRSLLLSNNFETSCVDAFSHRLQDLV*

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