Glyma12g15810 - SoyBase

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Report for Sequence Feature Glyma12g15810

Feature Type:	gene_model
Chromosome:	Gm12
Start:	14800089
stop:	14802076
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g15810

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G58720	AT	Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein \| chr3:21716920-21717892 REVERSE LENGTH=238	SoyBase	E_val: 6.00E-37	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG1493	KOG	Anaphase-promoting complex (APC), subunit 11	JGI		ISS
PTHR22766	Panther	RING FINGER PROTEIN 24-RELATED	JGI		ISS
PTHR22766:SF26	Panther	ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEI	JGI		ISS
PF00097	PFAM	Zinc finger, C3HC4 type (RING finger)	JGI		ISS
UniRef100_G7JDV1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: RING finger protein n=1 Tax=Medicago truncatula RepID=G7JDV1_MEDTR	SoyBase	E_val: 9.00E-100	ISS
UniRef100_I1KEK8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KEK8_SOYBN	SoyBase	E_val: 9.00E-165	ISS

Expression Patterns of Glyma12g15810

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g15810

Paralog	Evidence	Comments
Glyma06g42690	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g15810 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g131800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g15810

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma12g15810

Limit To All Plant Sequences

>Glyma12g15810.2   sequence type=transcript   gene model=Glyma12g15810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTCCTTTCGAAAATTTCCACCACTCATTTTATTCCTTTTTTAGGAGCTGTTTCCGTCTTCTCAAAACTTCCAACAAGCATCATATTGATAAAGAATCCATCAACATATGAGAATACGATTCTTCCTTGATTTCTGTTCCTTAATTTCTGAGCAGCAGCTACTAGAGCATCTTCAACATGGAGTGAGAAGCAGGCTTTGAATCAGAATAGAAAATGAAGGAACTAAAAAAGTAAGAGTAGAAGTGACACCATTATTACTAAAAGGATATATTCTTGTTTACACCCAAATGAACAGAACAAATGAATTCCCTTAGTTGACATATGAAGCAATATTTGCACCAGGAAAAAAGAAAAGCATTTTACATGATCAACTGAAGAGGAAGGTGAAATCATGAGCCGCAACATGAACAATTTTACACATTTGCTTGGGCCATGGCAAACAGATTTTAGATCCAATGATGGCCACACTTTCAATCATCGTGAATCCAATGAGGTGCCTGTGTTTTACAGATCTCACTCTACTCATGTCACTGATGACAGAAGTTCAGGTGTATTAGCTCGACAACGGTTTTCGGACTTCAGAAATCCTTTAGGATTCCACAGTATACCAAATTTTCCAGCACCACCACCTAGAAGACAACAAATTCATGTGCACAATGAGGATATGAGAAGGCTTAGAGAGATTTTCCTTCAGCCACCTCAAAGATCCACATTCCAAATAAACACACAAGCTCCCCCACCGGTAGAAATTTCCAAATCAACGGCTTTGAGCAAGCTTAAGAAAGTAGTCCATGACCCTCCACCAAAGAGGTATGCTAGGAGGGTGAGCTTATATTACAGAAACAATGTTGCAAAGCCTTGGAAAGAGAAGGAGAAAGAAAAGGATGAAGATGGCAAGAGTTGTGCTATTTGCTTGGAAGATTTTGAGCCCAGTGAGGAGGTCATGCTCACTCCTTGCAACCACATGTTTCATGAGGATTGCATTGTACCATGGCTAACAAGTAAGGGCCAGTGCCCAGTTTGTAGGTTTGTGATTTTTGAGATAGAAAGGGGGAATCAATCATCCTTCAATAACAATGACATTGCCAATTTGGAACCTAGCAACATTATTAATAGAGAGTTTTTGTCAATTTTGAGGGCAATGGAAGAAGATTTTCAATTGAGCAGTATGACTTACTAATGTACACATAAGAATTTGCTACAGTTGGGGGGAAGATTTATTTGTAGCTTCCAACATATACATGTTTTTCTGTTTTTGGCACAACATATACTACGAAATTTCGCAGGCAGAACTTGTGAGTTGTGAGTGATATGGAAATGAGACCGATTGGAAACCAACTTCTTATCCAATATTTTTC

>Glyma12g15810.3   sequence type=transcript   gene model=Glyma12g15810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTCCTTTCGAAAATTTCCACCACTCATTTTATTCCTTTTTTAGGAGCTGTTTCCGTCTTCTCAAAACTTCCAACAAGCATCATATTGATAAAGAATCCATCAACATATGAGAATACGATTCTTCCTTGATTTCTGTTCCTTAATTTCTGAGCAGCAGCTACTAGAGCATCTTCAACATGGAGTGAGAAGCAGGCTTTGAATCAGAATAGAAAATGAAGGAACTAAAAAAGAAAAAAGAAAAGCATTTTACATGATCAACTGAAGAGGAAGGTGAAATCATGAGCCGCAACATGAACAATTTTACACATTTGCTTGGGCCATGGCAAACAGATTTTAGATCCAATGATGGCCACACTTTCAATCATCGTGAATCCAATGAGGTGCCTGTGTTTTACAGATCTCACTCTACTCATGTCACTGATGACAGAAGTTCAGGTGTATTAGCTCGACAACGGTTTTCGGACTTCAGAAATCCTTTAGGATTCCACAGTATACCAAATTTTCCAGCACCACCACCTAGAAGACAACAAATTCATGTGCACAATGAGGATATGAGAAGGCTTAGAGAGATTTTCCTTCAGCCACCTCAAAGATCCACATTCCAAATAAACACACAAGCTCCCCCACCGGTAGAAATTTCCAAATCAACGGCTTTGAGCAAGCTTAAGAAAGTAGTCCATGACCCTCCACCAAAGAGGTATGCTAGGAGGGTGAGCTTATATTACAGAAACAATGTTGCAAAGCCTTGGAAAGAGAAGGAGAAAGAAAAGGATGAAGATGGCAAGAGTTGTGCTATTTGCTTGGAAGATTTTGAGCCCAGTGAGGAGGTCATGCTCACTCCTTGCAACCACATGTTTCATGAGGATTGCATTGTACCATGGCTAACAAGTAAGGGCCAGTGCCCAGTTTGTAGGTTTGTGATTTTTGAGATAGAAAGGGGGAATCAATCATCCTTCAATAACAATGACATTGCCAATTTGGAACCTAGCAACATTATTAATAGAGAGTTTTTGTCAATTTTGAGGGCAATGGAAGAAGATTTTCAATTGAGCAGTATGACTTACTAATGTACACATAAGAATTTGCTACAGTTGGGGGGAAGATTTATTTGTAGCTTCCAACATATACATGTTTTTCTGTTTTTGGCACAACATATACTACGAAATTTCGCAGGCAGAACTTGTGAGTTGTGAGTGATATGGAAATGAGACCGATTGGAAACCAACTTCTTATCC

Coding sequences of Glyma12g15810

Limit To All Plant Sequences

>Glyma12g15810.1   sequence type=CDS   gene model=Glyma12g15810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGGCCACACTTTCAATCATCGTGAATCCAATGAGTTTTCCAGCACCACCACCTAGAAGACAACAAATTCATGTGCACAATGAGGATATGAGAAGGCTTAGAGAGATTTTCCTTCAGCCACCTCAAAGATCCACATTCCAAATAAACACACAAGCTCCCCCACCGGTAGAAATTTCCAAATCAACGGCTTTGAGCAAGCTTAAGAAAGTAGTCCATGACCCTCCACCAAAGAGGTATGCTAGGAGGGTGAGCTTATATTACAGAAACAATGTTGCAAAGCCTTGGAAAGAGAAGGAGAAAGAAAAGGATGAAGATGGCAAGAGTTGTGCTATTTGCTTGGAAGATTTTGAGCCCAGTGAGGAGGTCATGCTCACTCCTTGCAACCACATGTTTCATGAGGATTGCATTGTACCATGGCTAACAAGTAAGGGCCAGTGCCCAGTTTGTAGGTTTGTGATTTTTGAGATAGAAAGGGGGAATCAATCATCCTTCAATAACAATGACATTGCCAATTTGGAACCTAGCAACATTATTAATAGAGAGTTTTTGTCAATTTTGAGGGCAATGGAAGAAGATTTTCAATTGAGCAGTATGACTTACTAA

>Glyma12g15810.2   sequence type=CDS   gene model=Glyma12g15810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCCGCAACATGAACAATTTTACACATTTGCTTGGGCCATGGCAAACAGATTTTAGATCCAATGATGGCCACACTTTCAATCATCGTGAATCCAATGAGGTGCCTGTGTTTTACAGATCTCACTCTACTCATGTCACTGATGACAGAAGTTCAGGTGTATTAGCTCGACAACGGTTTTCGGACTTCAGAAATCCTTTAGGATTCCACAGTATACCAAATTTTCCAGCACCACCACCTAGAAGACAACAAATTCATGTGCACAATGAGGATATGAGAAGGCTTAGAGAGATTTTCCTTCAGCCACCTCAAAGATCCACATTCCAAATAAACACACAAGCTCCCCCACCGGTAGAAATTTCCAAATCAACGGCTTTGAGCAAGCTTAAGAAAGTAGTCCATGACCCTCCACCAAAGAGGTATGCTAGGAGGGTGAGCTTATATTACAGAAACAATGTTGCAAAGCCTTGGAAAGAGAAGGAGAAAGAAAAGGATGAAGATGGCAAGAGTTGTGCTATTTGCTTGGAAGATTTTGAGCCCAGTGAGGAGGTCATGCTCACTCCTTGCAACCACATGTTTCATGAGGATTGCATTGTACCATGGCTAACAAGTAAGGGCCAGTGCCCAGTTTGTAGGTTTGTGATTTTTGAGATAGAAAGGGGGAATCAATCATCCTTCAATAACAATGACATTGCCAATTTGGAACCTAGCAACATTATTAATAGAGAGTTTTTGTCAATTTTGAGGGCAATGGAAGAAGATTTTCAATTGAGCAGTATGACTTACTAA

>Glyma12g15810.3   sequence type=CDS   gene model=Glyma12g15810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCCGCAACATGAACAATTTTACACATTTGCTTGGGCCATGGCAAACAGATTTTAGATCCAATGATGGCCACACTTTCAATCATCGTGAATCCAATGAGGTGCCTGTGTTTTACAGATCTCACTCTACTCATGTCACTGATGACAGAAGTTCAGGTGTATTAGCTCGACAACGGTTTTCGGACTTCAGAAATCCTTTAGGATTCCACAGTATACCAAATTTTCCAGCACCACCACCTAGAAGACAACAAATTCATGTGCACAATGAGGATATGAGAAGGCTTAGAGAGATTTTCCTTCAGCCACCTCAAAGATCCACATTCCAAATAAACACACAAGCTCCCCCACCGGTAGAAATTTCCAAATCAACGGCTTTGAGCAAGCTTAAGAAAGTAGTCCATGACCCTCCACCAAAGAGGTATGCTAGGAGGGTGAGCTTATATTACAGAAACAATGTTGCAAAGCCTTGGAAAGAGAAGGAGAAAGAAAAGGATGAAGATGGCAAGAGTTGTGCTATTTGCTTGGAAGATTTTGAGCCCAGTGAGGAGGTCATGCTCACTCCTTGCAACCACATGTTTCATGAGGATTGCATTGTACCATGGCTAACAAGTAAGGGCCAGTGCCCAGTTTGTAGGTTTGTGATTTTTGAGATAGAAAGGGGGAATCAATCATCCTTCAATAACAATGACATTGCCAATTTGGAACCTAGCAACATTATTAATAGAGAGTTTTTGTCAATTTTGAGGGCAATGGAAGAAGATTTTCAATTGAGCAGTATGACTTACTAA

Predicted protein sequences of Glyma12g15810

Limit To All Plant Sequences

>Glyma12g15810.1   sequence type=predicted peptide   gene model=Glyma12g15810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMATLSIIVNPMSFPAPPPRRQQIHVHNEDMRRLREIFLQPPQRSTFQINTQAPPPVEISKSTALSKLKKVVHDPPPKRYARRVSLYYRNNVAKPWKEKEKEKDEDGKSCAICLEDFEPSEEVMLTPCNHMFHEDCIVPWLTSKGQCPVCRFVIFEIERGNQSSFNNNDIANLEPSNIINREFLSILRAMEEDFQLSSMTY*

>Glyma12g15810.2   sequence type=predicted peptide   gene model=Glyma12g15810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSRNMNNFTHLLGPWQTDFRSNDGHTFNHRESNEVPVFYRSHSTHVTDDRSSGVLARQRFSDFRNPLGFHSIPNFPAPPPRRQQIHVHNEDMRRLREIFLQPPQRSTFQINTQAPPPVEISKSTALSKLKKVVHDPPPKRYARRVSLYYRNNVAKPWKEKEKEKDEDGKSCAICLEDFEPSEEVMLTPCNHMFHEDCIVPWLTSKGQCPVCRFVIFEIERGNQSSFNNNDIANLEPSNIINREFLSILRAMEEDFQLSSMTY*

>Glyma12g15810.3   sequence type=predicted peptide   gene model=Glyma12g15810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSRNMNNFTHLLGPWQTDFRSNDGHTFNHRESNEVPVFYRSHSTHVTDDRSSGVLARQRFSDFRNPLGFHSIPNFPAPPPRRQQIHVHNEDMRRLREIFLQPPQRSTFQINTQAPPPVEISKSTALSKLKKVVHDPPPKRYARRVSLYYRNNVAKPWKEKEKEKDEDGKSCAICLEDFEPSEEVMLTPCNHMFHEDCIVPWLTSKGQCPVCRFVIFEIERGNQSSFNNNDIANLEPSNIINREFLSILRAMEEDFQLSSMTY*

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